Kordia sp. SMS9: KORDIASMS9_04564
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Entry
KORDIASMS9_04564 CDS
T05562
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
kos
Kordia sp. SMS9
Pathway
kos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KORDIASMS9_04564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kos03021
]
KORDIASMS9_04564
03019 Messenger RNA biogenesis [BR:
kos03019
]
KORDIASMS9_04564
Transcription machinery [BR:
kos03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KORDIASMS9_04564
Messenger RNA biogenesis [BR:
kos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KORDIASMS9_04564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
Ndc1_Nup
SOG2
Motif
Other DBs
NCBI-ProteinID:
AXG72295
LinkDB
All DBs
Position
5243596..5245317
Genome browser
AA seq
573 aa
AA seq
DB search
MLEISELKSKKLPELQEIAKALAVPKYRTLKKLDLIYKILDLQASNPESVAPITKAEPKT
EDTVPKRKRIKRDANQRSDKPATPTQATPPQTKPAQTTPEKPNTQAPKQNKPARKTTDKN
QKNTPTQAKKEEVKKPGNDAPDTNKSNNSNSNNNNKNTNKPQQQNKNKKDHSQQSNKHKK
DHSHKNNGNKDQRNRYREPDFEFDGIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVS
QSQIRLFGLKTGDTVLGIVRPPKEGEKYFPLIKVSKINGMDPQVVRDRVAFEHLTPLFPD
EKFNLAERQSTISTRIMDLFSPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQI
VLLIDERPEEVTDMQRNVKGEVIASTFDKEATDHVKVANIVLEKAKRLVECGHDVVILLD
SITRLARAYNTVQPASGKILSGGVDANALHKPKRFFGAARNIEGGGSLSIIATALTETGS
KMDEVIFEEFKGTGNMELQLDRKISNRRIFPAIDLTSSSTRRDDLLLDESTIQRMWVMRK
YLADMNPVEAMEFINQRIKQTRNNEEFLISMNG
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaatttcagaattaaaaagtaaaaaactacctgaattacaggaaattgctaag
gcattagccgttccaaaatataggactttaaagaaattagacttaatttataagatatta
gaccttcaagctagcaatcctgagtctgttgcaccaatcacaaaagctgaaccgaaaacg
gaagatactgtaccaaagcgaaaacgtattaagagagatgctaatcaaagatctgataaa
ccagcaactccaacgcaagcaactcctcctcaaacaaagccagcccaaactactccagaa
aaacctaacacacaggctcctaaacaaaataaaccagcgcgcaagactacagataagaat
caaaaaaatacgcctacacaagcaaaaaaagaggaagttaagaagcctggaaatgatgct
cccgatacaaataaaagcaataattccaattcaaataacaacaataaaaataccaacaag
ccacaacagcagaataaaaataagaaagatcattcgcaacaaagtaataaacacaagaaa
gatcattcacataaaaataacgggaataaagatcagcgtaatcgctaccgcgagccagat
tttgagttcgacggcattattgaaagtgaaggtgtcttagacatcatgcaagatggatat
ggctttttaagatcgtccgattataattatttatcttctccagatgatatttatgtatcg
caatcgcaaattcgcttgttcggattgaaaactggagatacggtattagggattgtacgt
ccgccaaaagaaggcgaaaaatatttccctttaattaaggtaagtaaaattaacggtatg
gatccacaagtagtcagagaccgtgttgcttttgagcatttaacacctttatttccagat
gagaaatttaatttagcagaacgccaaagtacaatttctacacgtattatggatttattc
tctcctatcgggaaaggacaaagaggaatgatagtgtcgcaaccaaaaacaggtaaaact
atgttgctgaaagatgttgccaacgctattgcagcaaatcatcctgaagtatatcaaatt
gttttactaattgacgaacgtccagaggaagttacagacatgcaacgtaatgtaaaaggc
gaagtaattgcttctacgtttgacaaagaagcaacagatcacgtaaaagtggcaaacatc
gttttggaaaaagcgaaacgtttggtagaatgtggacatgacgttgttattttattagat
tcaattacacgattggcaagagcgtacaatacagtacaaccagcttctggaaaaatatta
agtggtggtgtagatgcaaatgcacttcacaaaccaaaacgtttctttggagcggctcga
aatattgaaggtggcggttctttatcgatcattgcgactgcattgaccgaaactggatct
aaaatggatgaggtaatttttgaagaatttaaaggaactggtaacatggaacttcaactg
gatcgtaagatttccaatagaagaattttccctgcaatcgaccttacttcttcaagcaca
cgtagagacgatttattgctggatgaaagtaccattcagcgtatgtgggtaatgcgcaaa
tatttggcagatatgaatcctgtagaagcaatggaattcattaaccaacgtatcaaacaa
actagaaacaatgaagaatttctaatctctatgaatggatag
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