Kosakonia sp. CCTCC M2018092: EH164_02205
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Entry
EH164_02205 CDS
T05734
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
kot
Kosakonia sp. CCTCC M2018092
Brite
KEGG Orthology (KO) [BR:
kot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kot03019
]
EH164_02205 (csrD)
Messenger RNA biogenesis [BR:
kot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EH164_02205 (csrD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
ERMP1-TM
Motif
Other DBs
NCBI-ProteinID:
AZI85949
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All DBs
Position
450748..452691
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AA seq
647 aa
AA seq
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MRLTTKFSAFVTLLTGLAIFVTLIGCSLSFYNAIQDKVANRVQAVATVIDTRLISTPFPR
LSTQLDEMMVPVDITSIAIKQGRHILLSHTRKGSYRPAGSNSAMREIEMPSMKIPGVTFT
LVYQDPMANYFRSMMTTAPLTVAIGFMIVIIFLAVRWLRRQLSGQELLELRATRILNGER
GAQVRGSIYEWPSRTSSALDVLLTDIQFASDQRSRMDTLIRSYAAQDTRTGLNNRLFFDN
QLATLLEDQEKVGSHGVVMMIRLPDFDLLRDSDGLASAAEEYLFTLINLLSTFIMRYPGA
LLARYHRSDFAVLLPHRTLKEAESIAGQILKAVDGLPPTKMLTREDIMHIGICSWRGGQS
TRQVMEHAEAAARNAVLQGTNSWSVYDDSLPEQGRGNVRWRTLIEQMLNRGGPRVYQKPA
VNRDGQVHHRELMCRIFDGEQEVIAEEYMQMVLQFGLSEEYDRLQITRLMPFLGYWPEEN
LAIEVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIFELAEADVCQHISRLQSVVRLINGL
GARVAVVQAGLTLVSTSWIKALDVELLKLHPGLVRNIEKRTENQLLVQSLVEACKGTRTR
VFATGVRTRGEWQMLVERGVAGGQGDFFAASQPLDTNVKKYSQRYSV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaatttagtgcttttgtaacacttcttaccgggctggcgattttc
gtcacgctcatcggctgctcactcagcttttataacgcgatacaggataaagtcgccaat
cgcgtgcaggccgtcgctaccgttatcgacacccgcctgatctccactccgtttccacgc
ctttccacgcagcttgatgagatgatggtgccggtagatatcacctcgattgccatcaag
cagggccgccatatccttttaagccacacgcgcaaagggagttatcgcccggcgggcagt
aactccgccatgcgcgagattgagatgccgtcgatgaagatccccggcgtgacctttacg
ctggtctatcaggatccgatggccaactacttccgctcgatgatgaccaccgcgccgctg
acggtggcgattggttttatgattgtcattatcttcctcgcggtgcgctggctacggcgg
caactctccggccaggagctgctggaactgcgggcgacgcgcatccttaatggcgagcgc
ggcgcgcaggtgcgcggcagcatctatgagtggccatcgcgcaccagcagcgcgctggac
gtgctgttaacagatattcagtttgccagcgatcaacgcagccgcatggatacgctgatc
cgctcttacgctgcgcaggacacgcgcaccggcctcaataaccgcctcttttttgataat
caactggcaacactattagaagatcaggaaaaggtcggttcgcacggcgtggtgatgatg
atccgcttgcccgattttgacctgctgcgcgacagcgacgggcttgcctctgccgccgaa
gagtatctctttacccttattaatttgctctccacctttattatgcgttatcccggcgcg
ctgctggcgcgctaccaccgcagtgattttgcggtactgcttccgcaccgcacattaaaa
gaggcggagagcattgccgggcagatcctgaaagcggtggatggcctgccgccgaccaag
atgctgacccgcgaagacattatgcatatcggcatttgcagctggcgcggcgggcagtcg
acccggcaggtgatggagcacgcggaggcggcggcgcgcaacgcggtgctgcagggcacc
aacagctggtcagtctatgacgactcgctacccgagcaggggcgtggcaatgtgcgctgg
cgcacgctgattgagcagatgctgaatcgcggtgggccgcgcgtctaccagaaaccggcg
gttaaccgcgacgggcaagtgcatcaccgggagctgatgtgccgcattttcgacggcgaa
caggaggtgatcgccgaagagtatatgcagatggtgctgcaatttggcctgtcagaggag
tatgaccggctgcagatcacgcgcttaatgccgttcctcggctactggcctgaagagaac
ctcgccattgaggtcaccgtcgagtcgctgatccgcccgcgcttccagcgctggctgcgc
gataccttgatgcaatgcgaaaaatcgcaacgtaaacggattatttttgaacttgcagag
gccgatgtgtgtcaacacatcagccgattgcagtcggtcgtgcgattgatcaatggatta
ggcgcgcgcgtggcggtggttcaggcgggtctgacgttggtcagcaccagttggatcaaa
gccctggatgttgagttactgaagctgcatccggggttggtcaggaacattgagaagcgc
accgaaaaccagctgctggtacagagccttgttgaagcgtgtaaaggcacacgaacccgc
gtctttgcgaccggcgttcgcacgcgcggcgaatggcagatgctggtggagcgaggcgtg
gcgggcggacagggcgatttcttcgcggcgtcccagccgctcgacaccaatgtgaaaaaa
tattcacaaagatactcggtttga
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