Kosakonia sp. CCTCC M2018092: EH164_02905
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Entry
EH164_02905 CDS
T05734
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kot
Kosakonia sp. CCTCC M2018092
Pathway
kot02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kot00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EH164_02905 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kot03021
]
EH164_02905 (rpoD)
Transcription machinery [BR:
kot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EH164_02905 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
Sas-6-like_oligomerization
Motif
Other DBs
NCBI-ProteinID:
AZI86080
LinkDB
All DBs
Position
complement(595599..597443)
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEQARLSDLITGFVDPNAEEDMAPTA
THVGSELSSEEMDDDEDEEEDDSDDDSDDDNSIDPELAREKFAELRTQYELTRDTIKAKG
RSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAALAMNKPWSEKLKDVTEEVQRGLMKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgttacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaacgacatgggcatccaggtgatggaagaagcgccg
gatgctgatgatctgttgctggctgaaaactccaacaacacagacgaagatgctgaagaa
gccgctgcacaggttctgtccagcgtagagtctgaaatcggacgaactaccgacccggtg
cgcatgtatatgcgcgaaatgggcaccgttgaactgctgacccgtgaaggcgaaatcgac
atcgccaaacgtattgaagacgggattaaccaggttcagtgctccgttgccgagtatccg
gaagctatcacctacctgctggaacagtacgaccgtgttgaagcagagcaggctcgtctc
tccgatctgatcaccggtttcgtcgatccgaacgccgaagaagatatggcgccaacggcg
acccacgtcggctctgagctctccagcgaagagatggacgacgatgaagatgaagaagaa
gacgacagcgatgacgacagcgacgatgacaacagcatcgaccctgagctggcgcgtgag
aaattcgctgaactgcgcacgcagtacgagctgactcgcgacactatcaaagcaaaagga
cgcagccacgctgccgcgcaggaagagatcctcaagctgtctgaagtcttcaagcagttc
cgtctggtgccgaagcagttcgactacctggtaaacagcatgcgcgtgatgatggatcgc
gtacgtacccaggaacgcatcatcatgaagctgtgcgttgaacagtgcaaaatgccgaag
aaaaacttcatcactctcttcaccggtaatgaaaccagcgaaacctggttcaacgccgcg
ctggccatgaacaaaccgtggtctgagaagctgaaagatgtgactgaagaagtgcaacgc
ggcctgatgaagctgcagcagattgaagaagagaccggcctgacgattgagcaggttaaa
gatattaaccgtcgtatgtctatcggcgaagcgaaagcgcgtcgtgcgaagaaagagatg
gtggaagcgaacttgcgtctggttatctctatcgccaagaaatataccaaccgtggtctg
cagttcctcgatctgattcaggaagggaacatcggcctgatgaaagcggttgataagttc
gaatatcgccgtggttacaagttctctacctatgcaacctggtggatccgtcaggcgatc
acccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagacg
atcaacaagctcaaccgtatctctcgccagatgctgcaagagatgggccgcgagccgacg
ccggaagagctggctgagcgtatgctgatgccggaagataagatccgcaaagtgctgaaa
attgccaaagagccaatctccatggaaacgccgattggcgatgatgaagattcgcatctg
ggtgattttatcgaggataccaccctcgagctgccgctggactctgcaaccaccgagagc
ctgcgcgctgcaacgcacgatgtgctggctggccttaccgctcgtgaagcgaaggtgctg
cgcatgcgtttcggtatcgacatgaataccgaccatacgctggaagaagtgggtaaacag
ttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgcaaactgcgc
cacccgagccgctctgaagtgctgcgtagcttcctcgacgattaa
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