Kosakonia sp. CCTCC M2018092: EH164_20895
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Entry
EH164_20895 CDS
T05734
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kot
Kosakonia sp. CCTCC M2018092
Brite
KEGG Orthology (KO) [BR:
kot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kot03016
]
EH164_20895
Enzymes [BR:
kot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EH164_20895
Transfer RNA biogenesis [BR:
kot03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EH164_20895
Prokaryotic type
tRNA splicing ligases
EH164_20895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AZI89355
LinkDB
All DBs
Position
complement(4443470..4444696)
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AA seq
408 aa
AA seq
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MQHNDYNLLARENSAPVKMWTHGVPVEPEAREQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLLASDLPDNLSGLRSAIEQAVPHGRSVNRS
KRDKGSWSRPPEEVDAHWASLAPRFKRLTDKYPRLLKTNNYQHLGTLGTGNHFIEVCLDE
QQRVWVMLHSGSRGVGNAIGNVFITLAQQDMQQHIANLPDRNLAYFREGSKHYDDYLEAV
EWAQDFARHNREVMMSRVLAALSSIVTKPFMTQQEAVNCHHNYVQKETHFGEEVLVTRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQIRA
TAHVECRKDSEVIDEIPMAYKDIDAVMAAQASLVEVVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcagcataacgattacaacctgctggcgcgtgaaaacagcgcgccggtgaagatgtgg
acccacggcgtgccggtcgagccagaagcgcgtgaacagttgcttaacaccgccaaaatg
ccttttattttcaaacatctggcggtgatgccggatgtgcatctcggtaaaggctctacc
attggtagcgtcatcccgactaaaggggcgattatcccggcggcggtcggcgtggatatc
ggttgcggcatgattgccgtgcgcacctcgctgctggcaagcgatctgcccgataacctg
agcgggctgcgcagcgccattgagcaagccgtgccgcacgggcgctcggtaaaccgatca
aagcgcgataaaggctcatggtcaagaccgccggaagaggtggatgcgcactgggcgtcg
cttgcgccgcgctttaagcggctgacggataaatatccgcgcttgctgaagaccaacaat
tatcagcatctgggaacattaggcaccggtaaccactttattgaagtgtgtctggatgag
cagcagcgggtctgggtgatgttgcacagcggttcgcgcggcgtgggtaacgccatcggc
aacgtctttatcaccctggcccagcaggatatgcagcagcatatcgccaatctgccggac
agaaacctcgcctatttccgcgaggggagcaagcactatgacgactatctggaggcggtc
gagtgggcgcaggatttcgcccgtcataaccgggaagtgatgatgtcgcgcgtgctggca
gcgctgtcgagtattgtcactaaaccctttatgacccagcaggaagcggtaaattgccac
cataactatgtgcaaaaagagacgcactttggtgaagaggtgctggtaacgcgtaaaggt
gcggtttcggcgcaaaaagggcagatggggattattcccggctcaatgggcgcgaaaagt
tttatcgtgcgcgggctgggaaatgaggagagcttctgctcatgcagccacggtgccggg
cgtaccatgagccgtaccgcggcgaaaaagcgctttaccgttgaagatcagatccgcgct
accgcgcatgtggagtgccgtaaagacagcgaggtgatcgatgagatcccaatggcctat
aaagatatcgacgccgtgatggcggcgcaggcctcgctggtggaagtggtgcataccctg
cgtcaggtggtgtgcgtaaaaggataa
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