Kosakonia sp. CCTCC M2018092: EH164_21115
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Entry
EH164_21115 CDS
T05734
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kot
Kosakonia sp. CCTCC M2018092
Pathway
kot03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EH164_21115 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kot03021
]
EH164_21115 (rpoC)
03400 DNA repair and recombination proteins [BR:
kot03400
]
EH164_21115 (rpoC)
Enzymes [BR:
kot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EH164_21115 (rpoC)
Transcription machinery [BR:
kot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EH164_21115 (rpoC)
DNA repair and recombination proteins [BR:
kot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EH164_21115 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AZI89392
LinkDB
All DBs
Position
complement(4490679..4494902)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVATTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSEFLEGEQVEYSRVKIANRDLESNGKISATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgaactggcttccccgaccgcgcacatttggttcctgaaatcactg
ccgtcccgtatcggtctgctgctggatatgccgctgcgtgatatcgaacgcgttctctac
ttcgaatcctatgtggttatcgaaggtgggatgaccaacctggaacgtaaccagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggcgccgaagcgatccaggccctgctgaaaagcatggatctggagcaagagtgcgaacag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgctggaagccttcgtacagtctggtaacaagccggagtggatgatcctgacc
gttctgccagtgctgccgccggacctgcgtccgctggttccgctggacggtggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggcggcaccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtcgacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgtttaaaccgttc
atttacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcctttgaaccggta
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttaccgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatatgaaaaagatgctaac
ggcgagttcgttgcgaccaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggtctgaagccgaccgttatcttc
gctgaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
atcgatgacatggtcatcccggagaagaaacacgagatcatctccgaagcggaagctgaa
gttgccgagatccaggagcagttccagtctggtctggtcaccgcgggcgaacgctataac
aaagttatcgatatttgggccgcggcgaacgatcgcgtatccaaagcgatgatggataac
ctgcagactgaaaccgttattaaccgtgacggcgttgaagagcagcaggtttcctttaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcccagattcgtcagctt
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgacccgtcgtctg
gttgacgtggcacaggatctggttgtaactgaagacgattgtggaaccctcgaagggatc
accatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagacattctgaagccgggcaccgcagacattctggttccgcgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagcgaactctgtcgactccgtg
aaagtgcgttccgttgtatcctgtgacaccgactttggtgtgtgcgcccactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggcgttatcgcagca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaatgcgaagtcggttgttaactccagcggtaagctggtggttacctcccgtaacact
gagctgaaactgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gcggtgatggcgaagggtgatggcgagcaggttgccggcggcgaaaccgttgcaaactgg
gatccgcacaccatgccggtaatcaccgaagtggctggtttcatccgcttcaccgacatg
atcgatggtcagacgattacccgtcagaccgacgaactgaccggtctctcttcgctggtg
gttctggactctgcagagcgtaccgctggcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaatggtaacgacgtactgatcccaggcaccgatatgcctgcccagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtacagatcagctccggtgacacc
ctggcacgtattccgcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgcggatctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtattatttccttcggtaaagagaccaaagggaaacgccgtctggtgatcacgccggtt
gacggtagcgatccgtacgaagagatgatcccgaaatggcgtcagctcaacgtgtttgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtcttcgtggcgtacacgcggtaacgcgttatatcaccaacgaagtacaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccattgtgaacgcgggcagctccgagttcctggaaggcgagcaggtt
gaatactctcgcgtcaagattgctaaccgcgatctcgaatcgaacggcaaaatcagtgca
acctatgcacgcgatctgctgggtatcaccaaagcgtctctggcgaccgagtccttcatc
tccgcggcatcgttccaggagacaactcgtgtgcttaccgaagcagctgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgccgctggcgaactgccggca
gcaccgcaggtcactgcggaagacgcgtccgcgagccttgcagaactgctgaacgcaggt
ctgggtggttccgacaacgagtaa
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