Kosakonia sp. MUSA4: C0557_09335
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Entry
C0557_09335 CDS
T09986
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kou
Kosakonia sp. MUSA4
Pathway
kou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C0557_09335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kou03400
]
C0557_09335
Enzymes [BR:
kou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0557_09335
DNA repair and recombination proteins [BR:
kou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C0557_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QJT80263
LinkDB
All DBs
Position
complement(1946315..1949761)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPTKAGDQRQFGELTGAACATEVAEIIERHAGPVVLIAPDMQNALRLQDEIS
QFTDNLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH
NYLHGHALVMKKGQRLSRDQLRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPF
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKNAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLSTLFSYFPANTLLVNTGDLEASAERFQQETQ
ARFESRGVDPMRPLLPPESLWLRSDALFSELKKWPRIQLKTERLSEKAAHVNLGYHALPE
LAVQTQQKSPLDNLRKFLESFSGPVVFSVESEGRREALIELLARIKVAPKRILRLDEAST
PGAWLMIGSAEHGFIDTLRNRALICESDLLGERVARRRQDTRRTINPDTLIRNLAELHDG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYAGDAKLYVPVSSLHLISRYAGGAEESA
PLHKLGSDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQSQILEQAAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAQLVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKDTNALEEIKVELIDRFGLLPDAARNLLDIALLRQQAQKLGIRKLEG
NEKGGIIEFNEKNNVNPLWLIGLLQKQPQHFRLDGPTRLKFMQDLSERKTRMDWVRNFMQ
QLAENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttattcactgccgaccaaagcgggtgaccagcgccagtttggc
gaactcaccggcgccgcctgcgccaccgaagtggcggaaatcatcgagcgccatgctggc
cccgtggtgctgatcgcaccggatatgcaaaatgccctgcgcttgcaggacgagataagc
cagtttaccgataatctggtgatgaacctggcagactgggaaacgctgccctacgacagc
ttttcgccgcaccaggagatcatctcttcccgtctttccaccctgtatcaactgcccgcc
atgcagcgcggcgtgctgattgtgccggtgaataccctgatgcagcgcgtctgcccgcac
aactatctgcacggccatgcgctggtgatgaaaaaagggcagcggctgtcccgcgatcag
ctgcgcacgcagttggacagcgccggttaccgccatgttgatcaggtgatggagcacggc
gagtatgccacgcgcggcgcgctgctggatctcttcccgatgggcagcgagcagccgttc
cgtctcgactttttcgacgatgaaatcgacagtttgcggctgttcgacgccgatacccag
cgcacgctggaagaggtcgaggcgattaatttactgcccgcgcatgaattcccgaccgat
aaaaacgccattgaactgttccgcagccagtggcgcgatcggtttgaggtgaagcgcgat
gctgaacacatttatcagcaggtgagcaaaggcaccctgcccgccgggatcgaatactgg
cagccgctgttttttagcgaaccgctgtcaacactgtttagctatttcccggcgaatacg
ctgctggttaacaccggcgatctggaagccagcgcggaacgttttcagcaggagacgcag
gcgcgctttgagagccgcggtgtggatccgatgcgcccgctgttgccgccggaaagctta
tggctgcgcagcgacgcgctgttcagcgaactgaaaaaatggccgcgtatccagctcaaa
actgaacggctcagtgaaaaagccgcgcacgttaatctcggttatcacgcattgccggag
ctggcggtgcagacacagcaaaaatcaccgctggataacctgcgtaagttccttgagtcc
ttcagcggcccggtggttttctcggtcgagagcgaaggccgccgcgaagcactgatagaa
ctgctggcgcgcattaaagtggcgcccaaacgcattttgcgtctcgacgaagcgtcaacg
cccggcgcctggctgatgatcggctcggcagagcacggttttatcgacactctgcgcaac
cgggcgctgatttgcgaaagcgatctgctgggcgagcgcgttgcgcgccgacgccaggat
acccggcggacgattaaccccgatacgcttatccgtaaccttgccgagctgcacgacggc
cagccggtagtgcatctggaacatggcgtcgggcgttatgccggtatgacgacgctggaa
gccggcggtattaaaggtgaatacctgatgctgacgtacgccggtgacgccaaactttat
gtcccggtctcttcgctgcatctgatcagccgctatgcgggcggcgcagaagagagtgcc
ccgctgcataaactgggcagcgatgcctgggcgcgggcgcggcagaaagcggcggaaaaa
gtgcgtgatgtggcggctgagctgctggatatctacgcgcagcgcgcggcaaaagcaggt
tttgccttcaagcacgatcgtgaacaatatcaactgttctgcgatagtttccccttcgaa
accacgccggatcaggcgcaggcgatcaacgccgtgctcagcgatatgtgccagccgctg
gcgatggatcgtctggtgtgcggcgatgtgggtttcggtaaaaccgaagtggcgatgcgc
gcggcattccttgcggtcgaaaacaacaagcaggtggcggtgctggtgccaaccaccctg
ctggcgcagcagcactttgataacttccgcgaccgttttgccaactggccggtgcgcatt
gagatgctctcacgctttcgcagcgccaaagagcagtcgcaaattcttgaacaggccgct
gaaggcaaaatcgatattctgatcggcacccacaaactgctgcaaagcgatgtgaagtta
aaagatctcggcctgctgattgttgacgaagagcaccgctttggcgtgcgccataaagag
cgcattaaagcgatgcgtgccgatgtcgacattctgacgctgacggcaacgccgatcccg
cgcacgctgaatatggcaatgagcgggatgcgcgacctgtcgatcatcgccacgccaccc
gcgcgccgtctggcggtaaaaacctttgttcgggagtacgacagcctggtggtgcgtgag
gcgatcctgcgtgaagtgctgcgcggcgggcaggtctactacctgtataacgacgtggaa
aatattcagaaagccgccgacaggctggcgcagctggtgccggaagcgcgtatcgcaatc
ggtcacgggcagatgcgcgagcgtgaactggaacgggtgatgaacgatttccatcatcag
cgtttcaacgtgctggtctgcaccaccatcattgaaaccgggatcgatattccgaccgcc
aataccattatcatcgaacgcgccgaccactttggcctcgcccagttgcaccagttgcgc
gggcgcgtcggacgctcacaccaccaggcttacgcctggctgctgactccgcacccgaaa
gcgatgactaccgacgcacaaaaacggctggaagctatcgcttcgctggaggatttgggc
gcaggttttgcgctggcaacgcacgatctggagatccgtggggcgggcgagctgctcggt
gaagatcagagcggccagatggaaaccatcggtttctcactgtatatggaactgctggaa
aacgccgttgatgcgctgaaggccggtcgcgagccgtcgctggaggatttaaccagccag
cagaccgaggtcgaactgcgcatgccttcgctgctgccggacgattttattcctgatgtt
aatacgcgtctgtcgttctataaacgcatcgccagcgcgaaagatacgaacgcgctggaa
gagattaaagtcgaactgatcgatcgctttggactactaccggatgcggcgcggaacctg
ctggatatcgccctgctgcgccagcaagcgcagaagctggggatccgcaaactggaaggt
aatgaaaaaggcggcatcatcgagttcaacgagaaaaacaacgtcaatccgttatggctg
attggtctgctgcaaaagcagccgcagcatttccgtctggatggtccgacgcggctgaaa
tttatgcaggatctgagcgaacggaaaacccgcatggactgggtgcgtaattttatgcag
caactggccgaaaacgccgtcgcctga
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