Kosakonia sp. MUSA4: C0557_23360
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Entry
C0557_23360 CDS
T09986
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kou
Kosakonia sp. MUSA4
Pathway
kou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0557_23360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kou03019
]
C0557_23360
03009 Ribosome biogenesis [BR:
kou03009
]
C0557_23360
Enzymes [BR:
kou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C0557_23360
Messenger RNA biogenesis [BR:
kou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0557_23360
Ribosome biogenesis [BR:
kou03009
]
Prokaryotic type
rRNA helicases
C0557_23360
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
QJT82814
LinkDB
All DBs
Position
complement(4849009..4850919)
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AA seq
636 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
SLPLLHNIDPDLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFL
ESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLEQYRALLAKIQPSSEEEMDI
ETLAAALLKMAQGERPLILPPDAPMRPKREFRERDERFERRGDRNDRGPRGERSERGGED
RPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELP
KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRERNERRGGGGGERRGGFGGERREGGRGE
ARRFSGERQEGRSFGGERRAPRRDRDENTSRRRNDA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcc
ctgaacgatctcggttacgaaaaaccatctccgatccaggctgagtgcattccgcacctg
ctgtctggtcgtgacgtactgggcatggcccagactggtagcggtaaaaccgcagcgttt
tctcttccgttgctccataacatcgatccggacctgcgtgcgccgcagatcctggtgctt
gctccgacccgcgaactggcggttcaggtagctgaagcaatgactgatttttctaaacat
atgcatggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgc
gccctgcgccaggggccgcagatcgtcgtcggtacgccggggcgtctgctggatcacctg
aaacgcggcacgctggatctctctaaactgagcggtctggttctggatgaagccgacgaa
atgctacgcatgggctttatcgaagacgttgaaacgattatggcgcagatcccggaaggt
catcagaccgcgctgttctctgcaaccatgccggaagcgatccgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtaaccactcgcccggacatc
agccagagctactggacggtgtacggcatgcgcaaaaacgaagcgctggttcgtttcctc
gaatcggaagattttgatgcggcgatcatcttcgttcgtaccaaaaacgcgacgctggaa
gtggctgaagccctggagcgcagcggctataacagcgccgcgctgaacggcgacatgaac
caggcgctgcgtgagcagaccctggaacgcctgaaagatggtcgtcttgatatcctgatc
gcaacagacgttgcggcgcgtggtctggacgttgagcgtatcagcctggtcgttaactac
gacattccgatggattctgaatcctacgttcaccgtatcggccgtaccggtcgtgcgggt
cgcgctggccgcgcactgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatt
gaacgcaccatgaagctgaccattccggaagtcgagctgccgaacgcagaactgctgggc
aaacgtcgcctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctg
gagcagtaccgcgcgctgctggcaaaaatccagccttcttctgaagaagagatggacatt
gaaacgctggccgccgcactgctgaaaatggcacagggcgaacgtccgctgattctgccg
ccggatgcgccgatgcgtcctaagcgtgaattccgcgaacgtgatgagcgtttcgaacgt
cgtggcgatcgcaacgaccgtggcccgcgtggcgagcgttccgagcgcggtggtgaagat
cgcccgcgtcgtgaacgtcgtgacgttggcgacatggaactgtaccgcattgaagtgggc
cgtgatgacggtgttgaagtacgtcatatcgttggcgcgattgctaacgaaggcgatatc
agcagccgttacatcggtaacatcaagctgtttggttcccactccaccattgagctgccg
aaaggtatgccgggtgaagttctgcagcacttcacgcgtacgcgtattctcaacaaaccg
atgaatatgcagttgctgggcgatgcacagccgcgcgagcgtaacgaacgtcgcggtggc
ggtggcggtgagcgccgtggtggtttcggtggcgaacgtcgtgaaggcggtcgtggcgaa
gcccgtcgtttcagcggtgagcgtcaggaaggccgtagttttggtggcgaacgtcgtgct
ccgcgccgcgatcgtgacgaaaacaccagccgtcgtcgcaacgacgcataa
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