Kovacikia minuta: K9N68_15840
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Entry
K9N68_15840 CDS
T07518
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kov
Kovacikia minuta
Pathway
kov03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K9N68_15840 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kov03021
]
K9N68_15840 (rpoB)
03400 DNA repair and recombination proteins [BR:
kov03400
]
K9N68_15840 (rpoB)
Enzymes [BR:
kov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K9N68_15840 (rpoB)
Transcription machinery [BR:
kov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K9N68_15840 (rpoB)
DNA repair and recombination proteins [BR:
kov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K9N68_15840 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
DUF2922
Motif
Other DBs
NCBI-ProteinID:
UBF29173
LinkDB
All DBs
Position
3332249..3335569
Genome browser
AA seq
1106 aa
AA seq
DB search
MTEQTYNTPAFTLPDLVEIQRASFRWFLEEGLIEELDSFSPITDYTGKLELHFLGKDFKL
KRPKYDVDEAKRRDSTYAVQMYVPTRLVNKETGEIKEQEVFIGDLPLMTDRGTFIINGAE
RVIVNQIVRSPGVYYKSETDKNGRRTYNASLIPNRGAWLKFETDKNDLVWVRIDKTRKLS
AQVLLKALGLSDGEIFDALRHPEYFQKTIEKEGQFGEEEALMELYRKLRPGEPPTVSGGQ
QLLDSRFFDPKRYDLGKVGRYKLNKKLRLNVPEPVRVLTPQDILAAIDYLINLEFDIGSI
DDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDADSLTPASLVNPKPLVAAI
KEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIE
TPEGPNAGLIGSLATHARVNAYGFIETPFLRVENGRVRRDLPPVYMTADEEDDLRAAPGD
VSLDEEGRILGEQVPVRYRQEWTTTTPDQVDYVAVSPVQIISVATSLIPFLEHDDANRAL
MGSNMQRQAVPLLRPERPLVGTGLETQAARDSGMVIVSRTNGEVTYVSADKIRVRDAQGR
EIEYQLQKYQRSNQDTCLNQRPIVFAGDKVVVGQILADGSATEKGELALGQNILVTYMPW
EGYNYEDAILISERLVIDDVYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQLDE
TGIIRIGAWTEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGR
VVDVRVFTREQGDELPPGANMVIRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPY
LPDGTPVDIVLNPLGVPSRMNVGQVYECLLAWAGQNLNVRFKVVPFDEMHGEEKSRETVH
SKLKEAREETLEATDGQRGDWLFNPDNPGKIQVYDGRTGEPFDRPVTVGKAYMLKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQ
GRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLCLDVAVHKLDTREDGTSRDTEVDLMA
DVSSRRAPSRPTYESISRDEMDESDE
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcagacttataatacgcccgcttttactttaccagacctggttgagattcag
cgggctagttttcgttggttcctggaagaggggctgatcgaggaactcgacagtttctca
ccaatcacagactacacgggcaagctggagcttcattttctggggaaagattttaagctg
aaacgccctaagtacgatgtggatgaggctaagcggcgggatagtacctatgccgttcag
atgtatgttcccacgcgtctcgttaacaaggaaacgggagagattaaggagcaggaggtc
ttcatcggcgatctgcctttgatgaccgatcgcggcaccttcatcattaatggggctgag
cgcgtgatcgtaaaccagattgtgcgtagccctggggtttactacaagtcagaaaccgat
aaaaacggacgccgcacctacaatgccagcttgatccccaatcgaggcgcatggctcaag
tttgaaaccgataagaacgatttggtctgggttcggatcgataaaacccgcaagctgtct
gctcaagttctacttaaagcactggggctgagtgacggtgaaatcttcgacgctctccgg
cacccggagtacttccagaagacgatcgaaaaagaagggcagtttggtgaagaagaagcc
ctgatggagttgtatcgtaagttgcgccctggtgaacctcccactgtgtctggggggcaa
cagctcttagactctcgcttctttgatcccaagcgctacgacctgggcaaggttggtcgt
tacaagctgaacaaaaagctgcggttaaatgttcccgaaccagtccgggtgctgacaccc
caagatatcctggcggcgatcgactatttgatcaacctggagtttgatatcggcagcatt
gatgatattgatcacctgggcaatcgacgggtgcgatcggtgggcgaactgctgcaaaac
caggtaagagtgggcttaaatcgactggagcggatcatccgggaacggatgacggtttcc
gatgcggattctctcacccctgcttccctggtcaaccccaaaccgttagtggctgccatt
aaagagttttttgggtcgtcccagctctcccaatttatggatcaaactaatccgttggca
gagttgacccacaagcggcggttgagtgcccttggtccaggtggtttgacacgggaacgg
gcaggctttgcggtgcgggacatccatccttctcactacgggcggatttgtccgatcgaa
acaccggaaggtccaaacgcgggtctgattggttctttagcaacccatgcccgtgtcaat
gcctatggctttatcgaaactccctttcttcgtgtagaaaatggacgggttcggcgtgat
ctgcctccggtttatatgactgcggatgaagaggatgatctgcgggcagcccccggagat
gtctccctggatgaggaaggcagaattctgggcgagcaagtccctgttcgctaccggcaa
gaatggacgaccaccacccctgaccaggttgactatgttgccgtttctccggttcagatt
atttcggtcgcaacctctctgattcccttcctggagcatgatgatgcgaaccgggcactg
atggggtcaaacatgcaacggcaggcggtacccctcttgcgtccagagcgtccgctggtg
ggaacagggctagaaactcaagctgcccgtgactctgggatggttatcgtcagtcggact
aatggggaggttacctacgtctcggcggacaaaattcgagttcgtgatgcgcagggacgc
gagatcgagtatcagctccagaagtatcaacggtctaaccaggacacctgtttaaatcaa
cgaccgatcgtgtttgcaggcgataaggtggtggttggtcaaatccttgcggatggctct
gcaacggaaaagggcgaactggcactgggacaaaatatcctggttacctatatgccctgg
gaaggctacaactacgaggatgccattctaatcagtgaacggctggtgattgacgacgtt
tatacttccattcacattgagaagtacgaaattgaagctcgtcaaaccaaactgggacct
gaggaaattacccgtgaaattcctaacgtcggtgaagatgccctgcgtcaattggacgaa
acgggcattatacggattggtgcgtggactgaagccggagatatcctcgtcggtaaagta
acgccgaagggtgaatcggatcagcccccggaagaaaaacttctgcgtgccattttcggt
gaaaaggcgagggatgtgcgggataactccctgcgggtaccgaatggcgaaaaagggcgg
gttgtcgatgtgcgggtatttacccgtgaacaaggggatgaactgcctcctggtgccaat
atggtgatccgcgtttatgttgcccagaaacgcaaaattcaggtgggtgacaagatggcg
ggtcgccacgggaataagggaattatttcccgcattttacccgtggaagatatgccctat
ttgccggacggcacccctgtcgatatcgtgttgaatccactgggggttccgtctcggatg
aatgtggggcaggtttatgagtgcttgctggcatgggcagggcaaaacctgaacgtgcgt
ttcaaagtcgttccttttgatgaaatgcacggggaagagaagtcgcgtgaaacggttcat
agcaaacttaaggaagcccgtgaagaaaccctggaagcaacggatggacagcggggagat
tggttgtttaaccctgacaatccgggcaagatccaggtttacgatgggcggacgggggaa
ccgttcgatcgccctgtcaccgtgggcaaagcctatatgctgaaactggttcacctggta
gatgacaagatccacgcccgttcaactggaccctactctttggtgactcagcaacccttg
ggtggtaaggcgcaacagggtggccaacggtttggagaaatggaagtgtgggcactggaa
gcttttggtgcagcctacacattgcaggaactcctgaccgttaaatcggatgacatgcag
ggtcgtaacgaagcgctgaacgcgatcgtcaaaggcaaggcaattcctcggccgggaacc
cctgaatccttcaaagtgctaatgcgtgaacttcaatcactctgtctagatgtggcggtt
cacaaacttgatactcgagaagacgggactagccgagatacagaagttgacctgatggca
gatgtcagcagtcgtcgtgccccttccagacccacctatgaatccatttctagagatgag
atggatgaaagcgatgagtag
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