Kovacikia minuta: K9N68_22290
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Entry
K9N68_22290 CDS
T07518
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kov
Kovacikia minuta
Pathway
kov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9N68_22290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kov03019
]
K9N68_22290
Enzymes [BR:
kov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K9N68_22290
Messenger RNA biogenesis [BR:
kov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K9N68_22290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
Cas3-like_C_2
HEM4
P-loop_SecA
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UBF24413
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All DBs
Position
4737441..4738733
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AA seq
430 aa
AA seq
DB search
MTFQTLGLSTELLRAINDEGYTTATPIQQQAIPAILQGHDIFASAQTGTGKTAGFTLPLL
QRLNLSSSRKGYRNPRALILTPTRELAAQVGDSVKTYGKYLAPKSAVIYGGVGFVPQVQA
LKRGVDIVVATPGRLLDHITQKTVDLSQIEILVLDECDRMLDMGFIHDIRKLLVKLPASR
QTLMFSATFSPAIRQLASTLLKQPVHIEVAPRNTAAEQVEQIVHPVDRARKRELLSYLIG
FNNWKQVLVFTRTKHGANRLAEQLAQDGLKTAAIHGNKTQAARTRALADFKQGKVRVLVA
TDVASRGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGHVGQAISLVSQDENSLLKGIE
QLLNRNLTTDVISGYEPTASSRLQSEAKPAQPRSKQRRGGQRQTHVAPSPSRGKKSDATG
SRKRKQLRAI
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaaactctcggtctttcgaccgaattgctgcgtgctattaatgacgaaggc
tacactacagcaacgccaattcagcagcaagctattcctgcaattttgcagggacacgat
atttttgcgagtgcccaaactggaactggtaagactgccggttttacgctgccattactg
caacgcctgaacctctcatcctccagaaaaggctatcgcaatccgcgtgccttgattctg
accccaactcgtgaactagctgctcaggtcggtgatagcgtcaaaacctatggcaaatat
ctggctcctaagtcggcggtgatttatggcggtgttggctttgtgccgcaagtacaagcg
ttgaaacggggcgtagatattgtcgtcgcgactcccggacggttactagaccacataaca
cagaagaccgtcgatctgtcccaaattgagattttggttctagatgagtgtgatcgcatg
ttagacatggggttcatccacgacattcgcaaactattggtaaaactgcccgcctctcgg
caaacgttaatgttctctgccaccttttcgcccgcgattcggcaactcgctagcaccttg
ctcaaacagcctgtgcacattgaagtggcacctcgtaatacagcagctgaacaagttgaa
caaatcgtgcatcccgttgatcgcgcccgcaaacgagaattgctatcttacctaattggc
tttaataactggaaacaggtcctggtttttacccggaccaaacacggggcgaatcgtctg
gctgagcaattggctcaagatgggctgaaaactgctgcaattcatgggaataaaacccaa
gctgcccggactcgggccttggctgactttaagcaagggaaggtgcgcgttcttgttgcc
accgatgttgcctcgcgagggttagacattgatcagcttcctcatgtagtgaattttgaa
ctgcccaatgtaccggaagactatgtgcaccggattggtcgaacgggtcgtgcgggacat
gtaggacaggcaatttctctggtctcgcaggatgagaactccctgttaaaggggatcgag
cagctattaaaccgaaatctaacaacagatgtcatttcgggctatgaaccgacggcttct
tctcggttacagtcagaggcgaaaccggctcaaccacgatcaaaacagcgccgaggggga
cagcgccaaacgcacgttgctccatccccttcccgtggaaaaaaatctgatgctactggc
agccggaagcgcaaacagcttcgcgcgatttaa
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