Klebsiella michiganensis HKOPL1: J415_00870
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Entry
J415_00870 CDS
T03188
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
koy
Klebsiella michiganensis HKOPL1
Pathway
koy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J415_00870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koy03019
]
J415_00870
03016 Transfer RNA biogenesis [BR:
koy03016
]
J415_00870
Enzymes [BR:
koy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J415_00870
Messenger RNA biogenesis [BR:
koy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J415_00870
Transfer RNA biogenesis [BR:
koy03016
]
Prokaryotic type
tRNA degradation factors
J415_00870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AHW85740
LinkDB
All DBs
Position
complement(186254..188704)
Genome browser
AA seq
816 aa
AA seq
DB search
MSQDPFLDRESEKYANPIPSREFILDHLAKREKPASRDELAIELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVAGLKEQVPEEAKQGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAEEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKGGAGKSSGRRRQAGKQVNFEPDSAFRKQKGQSQPKA
AQPKGEKKAKKPSEKTQKIAAATKAKRAAKKKNIAE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaccgcgaatctgaaaaatacgctaatccaatcccgagc
cgggaatttatcctcgatcatttagcaaaacgcgaaaaaccggctagccgagatgagctg
gcaatagagctgaatattgaaggcgaagaacaacaagaagcattgcgccgcagactgcgc
gcaatggaacgcgatggtcagctggtctttacgcgtcgtcagtgctatgcgctgccggaa
cgtcttgacctgctgaaagggaccgttatcggtcatcgcgatggttatggcttcctgcgc
gttgaaggccgtaaagatgacctgtatctgtcgtccgagcagatgaaaacctgtattcac
ggcgatcaggtgctggcgcagccgctgggcgccgaccgtaaaggccgtcgcgaagcgcgt
attgtccgcgtactggtgccaaaaacgggccagattgtgggccgctactttaccgatgcg
ggcgttggcttcgtggtgccggatgacagccgcctgagcttcgatatcctgatccccccg
gaacagatcatgggcgcgcggatggggtttgtggtggtggttgagctgacccagcgccca
acccgccgcaccaaagcggtcggcaagatcgttgaggtcctcggcgacaatatgggtacc
ggcatggcggtcgatatggccctgcgcacccatgaaattccctacgtctggccgccagcg
gtcgaaaaacaggtcgccggcctgaaagaacaggtaccggaagaggcgaaacaagggcgc
gttgatttacgcagcctgccgctggtcaccattgatggcgaagacgcccgtgactttgat
gatgccgtgtactgcgagaagaaacgcggcggtggctggcgtctgtgggtggcgatcgcc
gatgtgagctactacgtgcgcccgggtacgccgctggatggcgaagcgcgcagccgcggc
acgtcggtctacttcccgtctcaggtggttccgatgctgcctgaagtgctctctaacggc
ctgtgttcactgaatcctcaggtcgacaggctctgtatggtttgtgaaatgacgatttcg
gccaaggggcgtctgaccggcttcaaattctacgaagcggtgatgagctcccatgcccgt
ctgacctataccaaagtctggcatatgctgcagggcgaccaggatctgcgtgagcagtac
gcgccgctggttaagcatattgaagagctgcataacctctacaaagtgctggacggcgcg
cgtgaagagcgcggcggtatctcatttgagagtgaagaagctaaattcatctttaatgct
gaacgccgcattgaacgtattgagcagactcagcgtaacgacgcgcacaagctgattgaa
gagtgcatgatcctggcgaacatctccgctgcgcgcttcgttgagaaggccgaggaaccg
gcgctgttccgtatccatgacaaaccgagtacggaagcgattaccgcattccgttcggtg
ctcgcggagctggggcttgagctgcctggcggcaacaagccggagccgcgcgactatgcg
gaattactgacctctatcgccgatcgtccggatgcagagatgctgcaaactatgctgctg
cggtcgatgaaacaggcgatatacgacccggaaaaccgcggtcactttggtctggcgctg
caatcctatgctcacttcacctcgccgattcgccgctatcctgacctttcgctgcatcgc
gcgatcaagtatttactggcgaaagagcagggacataaaggcaatagcaccgagaccggc
ggctggcactacagcatggacgagatgctgcagctgggggcgcactgttcgatgaccgag
cgtcgtgctgatgaagcgacgcgcgatgtttcggactggctgaagtgtgatttcatgctg
gatcaggtgggtaacgtctttaagggcgtgattgccagcgtgaccggctttggtttcttc
gtccgtctggatgagctgtttattgatggtctggtgcacgtctcttccctcgataacgac
tactaccgcttcgatcaggtcggacagcgtctgattggtgaatccggcggccagacctat
cgactgggcgatcgcgtggaagtgcgcgttgaagcggtcaacatggacgagcgtaaaatt
gacttctcgcttatctccagcgagcgcgcgccgcgcaacgtcggtaagaccgagcgtgaa
aaagcgaagaagggcggcgcaggtaaatcttccggacgacgccgtcaggcgggcaagcag
gtaaacttcgagccggatagcgcattccgcaaacagaaaggtcagtctcagccgaaagcc
gctcagccaaaaggcgagaagaaagcgaagaagccgtcggagaaaacccagaagatagcc
gcagcgaccaaagccaagcgcgcggcgaagaaaaagaatatcgctgagtag
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