Klebsiella michiganensis HKOPL1: J415_06120
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Entry
J415_06120 CDS
T03188
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
koy
Klebsiella michiganensis HKOPL1
Pathway
koy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J415_06120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koy03019
]
J415_06120
03016 Transfer RNA biogenesis [BR:
koy03016
]
J415_06120
Enzymes [BR:
koy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J415_06120
Messenger RNA biogenesis [BR:
koy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J415_06120
Transfer RNA biogenesis [BR:
koy03016
]
Prokaryotic type
tRNA degradation factors
J415_06120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
OB_RRP5_4th
KH_2
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AHW86773
LinkDB
All DBs
Position
1312066..1314204
Genome browser
AA seq
712 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA
ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDEALDANELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQPAAAPEAPAAEQQGE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggccaacataccgtaacgctggagacc
ggcatgatggcgcgccaggcaactgccgccgttatggttagcatggatgacaccgcggta
ttcgttaccgttgtgggccagaaaaaagcgaagccaggccaggatttcttcccgctgacc
gttaactatcaagagcgtacctacgctgcaggtaaaatcccgggtggtttcttccgtcgt
gaaggccgtccgagcgaaggcgaaaccctgatcgcgcgtctgattgaccgcccggttcgc
ccgctgttcccggaaggcttcgttaacgaagttcaggttatcgcaactgtggtttccgtt
aacccgcaggttaacccggatatcgtcgcgatgatcggcgcttccgcagcgctgtccctg
tctggtattccgttcaacggcccaattggcgccgctcgcgttggttatattaatgaccag
tacgtgctgaacccgacccaggaagagctgaagtccagcaaactggatctggttgtcgcg
ggtaccgaagccgcagtactgatggttgaatccgaagctgaactgctgagcgaagaccag
atgctgggcgcggtcgtgtttggtcacgaccagcagcaggtggttattcagaacatcaac
gatctggtgaaagaagccggtaagccgcgctgggactggcagccggaagtggttgatgcg
gcgctgaacgcgcgcgttgccgcgctggctgaatctcgcctgagcgatgcttaccgtatc
accgacaaacaggagcgctatgctcaggttgacgtgatcaaatctgaaactatcgcgacc
ctggttgcggaagatgaagctctggacgctaacgaactgggcgaaatcctgcacgcaatc
gagaaaaacgtggtgcgtagccgcgtactggccggtgagccgcgtatcgatggtcgtgaa
aaagatatgattcgtggtctggacgttcgtaccggcgttctgccgcgtacccacggttcc
gcactgtttacccgtggcgaaactcaggcgctggttaccgcgaccctgggtaccgcacgc
gacgcgcagaacatcgatgaactgatgggcgagcgcacggactccttcctgttccactat
aacttccctccgtactccgtaggcgaaacgggaatggtcggttctccgaagcgtcgtgaa
attggtcacggtcgtctggctaagcgcggcgtactggccgtgatgccgactatcgaagag
ttcccgtacaccgttcgcgtggtttctgaaatcaccgaatctaacggctcctcctccatg
gcttccgtctgtggcgcttctctggcgctgatggacgcaggcgtgccggtgaaagccgcc
gttgcgggtatcgcaatgggtctggtgaaagaaggcgacaacttcgtcgtactgtctgac
attctgggcgatgaagatcacctgggcgatatggacttcaaagtagcgggttcccgcgaa
ggtatctctgctctgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgctctgaaccaggctaaaggtgcgcgtctgcacatcctgggcgtgatggaacaggcg
attaacgcgccgcgcggcgatatctctgaattcgcaccgcgtatccacacgatcaagatc
agtccggacaaaatcaaagacgttatcggtaagggcggttccgttattcgtgcgctgacc
gaagaaaccggcaccactatcgaaatcgaagatgacggtaccgtgaagatcgcggcaacc
gacggcgacaaagcgcagcacgcgattcgtcgtatcgaagagatcaccgctgagatcgaa
gttggccgtatctataacggtaaagtgacccgtatcgttgactttggcgcgtttgttgcc
attggcggcggtaaagaaggtctggttcacatctctcaaatcgccgacaagcgcgttgag
aaagtgaccgactatctgcagatgggtcaggaagtgccggttaaggttctggaagttgac
cgtcagggccgtgtccgtctgagcatcaaagaagcaactgaacaaactcagcctgcggct
gcgccggaagctccggctgccgaacagcagggcgagtaa
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