Klebsiella michiganensis HKOPL1: J415_06130
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Entry
J415_06130 CDS
T03188
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
koy
Klebsiella michiganensis HKOPL1
Pathway
koy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J415_06130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koy03019
]
J415_06130
03009 Ribosome biogenesis [BR:
koy03009
]
J415_06130
Enzymes [BR:
koy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J415_06130
Messenger RNA biogenesis [BR:
koy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J415_06130
Ribosome biogenesis [BR:
koy03009
]
Prokaryotic type
rRNA helicases
J415_06130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHW86775
LinkDB
All DBs
Position
1315370..1317322
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AA seq
650 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
VETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRGGEERP
KRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG
MPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERSGERRGGGERREGGRSFGGGERREGRG
FGGERREGGRGEGRRFSGERREGGRAPRRDDASAPRRDDSAGRRRFGGDA
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcccatccttgaagcg
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgcattccgcatctg
ctgggcggccgcgacgttctgggtatggcccagacgggtagcggtaaaaccgcagcgttc
tctttaccgctgctgaacaacatcgatcctgagctgagagcaccgcagattctggtgctg
gcgccgacccgcgaactggcggtacaggttgctgaagcaatgacggaattctctaaacat
atgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcagctgcgc
gcgctgcgtcaggggccgcaaatcgttgtcggtaccccgggtcgtctgctggaccacctg
aaacgcggtacgctggatctctctaagctgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgtagaaaccattatggcgcagatcccggagggt
catcagaccgctctgttctctgccaccatgccggaagccattcgccgtattacccgccgc
tttatgaaagagccgcaggaagtgcgcatccagtcgagcgtaacaactcgcccggacatc
agccagagctactggactgcttacggtatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggccgaagcgctggagcgtagcggttatagcagcgctgcgctgaacggcgacatgaac
cagtccctgcgtgagcagactctggagcgtctgaaagatggtcgtctggatatcctgatt
gcaaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtggttaactac
gatatcccgatggattccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggtcgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaatatt
gaacgtacgatgaagctgaccattccggaagttgaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaattcgcggcgaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgccgaaggcgaagagctggac
gtggaaacgctggccgccgcgctgctgaaaatggctcagggcgaacgtccgctgatcctg
ccgccggatgcgcctatgcgtcctaagcgcgagttccgcgaccgtgacgatcgtttcgaa
cgtcgcggcgaccgtaacgatcgtggcccgcgcggcgatcgcggtggcgaagaacgtccg
aagcgtgagcgtcgtgacgttggcgatatggaactgtaccgcattgaagtgggccgtgat
gacggcgttgaagttcgtcacatcgttggcgcaattgctaacgaaggcgacatcagcagc
cgttacatcggtaacatcaagctgtttggttctcactccaccatcgaactgccgaaaggc
atgccgggcgaagtgctgcagcactttacgcgtacccgcatcctgaacaagccgatgaac
atgcagctgctgggcgatgctcagccgcgtcctgaacgcagcggcgaacgtcgtggcggc
ggcgagcgtcgtgaaggcggtcgtagcttcggcggtggtgaacgtcgtgaaggccgtggt
ttcggcggtgagcgtcgcgaaggcggccgtggtgaaggtcgtcgtttcagcggcgaacgt
cgtgaaggtggccgcgcgccgcgccgcgatgatgcttcagctccgcgtcgcgatgactcc
gcaggtcgtcgtcgtttcggtggcgatgcataa
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