Klebsiella michiganensis HKOPL1: J415_20135
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Entry
J415_20135 CDS
T03188
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
koy
Klebsiella michiganensis HKOPL1
Pathway
koy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
koy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J415_20135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
koy03400
]
J415_20135
Enzymes [BR:
koy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J415_20135
DNA repair and recombination proteins [BR:
koy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J415_20135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
DUF488
Motif
Other DBs
NCBI-ProteinID:
AHW89454
LinkDB
All DBs
Position
4215074..4218520
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQIGELTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIR
QFTDSMVAGLADWETLPYDSFSPHQDIISSRLATLYQLPTMERGVLIIPVSTLMQRVCPH
NFLHGHALVMKKGQRLSRDALRSQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVASINLLPAHEFPTDQAAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPAKTLIVNTGDLEASAERFQNETR
ARFENRGVDPMRPLLPPEQLWLRSDELFSELKKWPRVQLKTERLAEKAANTNLGYQKLPE
LAIQAQNKAPLDNLRRFLESFSGPVIFSVESEGRREALGEMLARIKIAPKHILRLEEATG
NGRYLMIGAAEHGFVDSQRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGINGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDVWARARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKVDILIGTHKLLQPDVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARITI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLES
NEKGGTIEFNEKNNVNPMWLIGLLQKQPQHYRLDGPTRLKFTQDLAERKTRMEWVRQFMR
QLEENAAA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaataccgatactctctgccggttaaagccggcgatcagcgccagattggc
gaactgaccggcgcggcctgcgccactctggtggcggaaatggccgagcgccacggcggc
ccggtggtactgattgcccccgatatgcaaaacgccctgcgtctgaatgatgaaatcagg
cagtttaccgatagcatggtggcgggcctggcggattgggaaaccctcccctacgatagc
ttttccccgcaccaggacattatctcttcccgtctcgccaccctgtaccagctcccgacc
atggaacgcggcgtactaattatcccggtcagcaccctgatgcagcgcgtctgtccgcat
aatttcctccacggccacgcgctggtgatgaaaaaaggccagcgcctgtcgcgggatgcg
ctgcgctcccagctggatagcgccggctatcgtcacgtcgaccaggtgatggagcacggc
gagtacgccacgcgtggcgcattgcttgacctgtttcctatgggcagcgagcagccctac
cgtctcgatttttttgatgatgagatagacagcctgcgtctgttcgacgtcgacagccag
cgtacgctggaggaagtcgccagcattaacctgcttccggcgcacgaattcccgacggat
caggccgctatcgagctattccgcagccagtggcgcgaccgctttgaggtcaaacgcgac
gccgagcatatttatcagcaggtcagtaaaggcacgctgcccgcgggaatcgaatactgg
cagccgctgttctttaacgagccgctgccgccgctgttcagctatttcccggcgaaaacg
ctgatcgttaataccggcgatctggaggccagcgccgaacgcttccagaacgaaacccgc
gcccgctttgaaaaccgcggcgtcgacccgatgcgcccgcttttgccgccggaacagctg
tggctgcgcagcgatgagctgtttagcgagctcaaaaaatggccgcgcgtccagctcaaa
accgagcgtctggcggaaaaagccgccaacaccaatctcggttatcagaaattacccgag
ctggcgatccaggcgcagaacaaagcgccgctggataacctgcgccgattcctcgagtcc
ttcagcgggccggtgattttttcggtcgagagcgaggggcgtcgagaggcgcttggcgaa
atgctggcgcgtattaagatcgcgccaaagcatatcctgcgtcttgaagaggcgacgggt
aatggccgctatctgatgatcggcgccgccgagcatggtttcgtcgatagccagcgtaat
ctggcgctgatttgcgaaagcgacctgctgggcgagcgcgtcgcgcgccgtcgtcaggac
tctcgccgcaccatcaatcccgatacgttgattcgtaacctggcggagctgcatatcggc
caaccggtggtgcatcttgagcatggagttgggcgctacgccggaatgaccacccttgaa
gcgggcggcatcaacggcgaatacctgatgctgacctacgccaacgatgccaaactgtac
gtgccggtgtcgtcgctgcatctgattagccgctatgcgggcggcgcggaagagaatgcg
ccgctgcataaactgggcggcgacgtctgggcgcgggcgcggcagaaagcggccgagaaa
gtgcgcgacgtggccgccgaactgctggatatctacgctcagcgtgcggcgaaagcgggc
tacgcgtttaaacatgataaagagcaatatcaactgttctgcgacggcttcccgttcgag
accacgcccgatcaggcgcaggctattaacgccgtactaagcgatatgtgtcagccgctg
gcgatggaccgtctggtgtgcggcgatgtcggcttcggcaaaacggaagtggcgatgcgc
gccgcgtttctggcggttgaaaaccataagcaggtggcggtgctggtgccgaccaccctg
ctcgcccagcagcacttcgataactttcgcgatcgcttcgccaactggccggtgcgcatc
gagatgctctcgcgctttcgtagcgccaaagagcaggcgcagatcctcgagcaggtcgcg
gaagggaaagtcgatattcttatcggcacccataaactgctgcagccggacgttaagctg
cgcgatctcggcctgctgattgttgatgaagagcaccgcttcggcgtgcgccataaagag
cgcatcaaggcgatgcgcgccgacgtcgatatcctgaccctgaccgccacgcctattccg
cgtacgctgaatatggcgatgagcggtatgcgcgatctgtcgatcatcgccaccccgccc
gcccgccgtctggcggtcaaaaccttcgtccgcgaatatgacgcgctggtggtccgcgag
gcgatcctgcgtgaggtactgcgcggcggccaggtttactacctctataatgacgtggaa
aacatccagaaagccgccgagaggctggcggagctggtgccggaagcgcgcattaccatc
ggtcacggccagatgcgcgagcgcgaactcgaacgggtgatgaacgatttccatcaccag
cgctttaacgtgctggtgtgcaccaccattatcgaaaccgggatcgacattccaacggcg
aacaccattattatcgagcgcgccgatcacttcggtctcgcacagctgcaccagctacgc
ggtcgcgtcggtcgttcgcaccatcaggcctatgcctggctgctgaccccgcatccgaag
gcgatgaccaccgatgcgcaaaaacgccttgaggcgattgcatcgctggaagatctcggc
gctggtttcgctctggcaacgcatgacctcgaaattcgcggcgcgggtgaactgttgggc
gaggatcagagcggttccatggaaaccatcggcttctccctctatatggagctgctggaa
aatgccgttgacgcgctgaaagcaggccgcgaaccctcgctggaggatcttaccagtcag
cagaccgaagttgagctacggatgccgtcgctgctgccggatgactttatcccggatgtg
aatacgcgcctgtcgttctacaaacgcattgccagcgcgaagaacgagaatgagctggag
gagatcaaagtcgagcttatcgatcgctttggcctgctgcccgatccggcaagaaacctg
ctcgatatcgcccgactgcgccagcaggcgcagaagctggggatccgcaagctggagagc
aacgaaaagggcggcaccattgagtttaacgagaagaataacgtgaatccgatgtggctg
attggcctgttgcaaaagcagcctcagcactatcgcctggatggcccaacgcgcctcaag
tttacgcaggaccttgccgagcgtaaaacgcggatggagtgggtgcgccagtttatgcgc
cagctcgaagagaacgccgccgcctga
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