Klebsiella michiganensis HKOPL1: J415_26460
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Entry
J415_26460 CDS
T03188
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
koy
Klebsiella michiganensis HKOPL1
Brite
KEGG Orthology (KO) [BR:
koy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koy03019
]
J415_26460
Enzymes [BR:
koy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J415_26460
Messenger RNA biogenesis [BR:
koy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J415_26460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AHW90655
LinkDB
All DBs
Position
complement(5562543..5564972)
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AA seq
809 aa
AA seq
DB search
MSSLPVAAVLPELLSALRHAPQVLLNAPTGAGKSTWLPLQILAEGNINGRIILLEPRRLA
ARNVAQRLAELLGEKPGETVGYRMRAETCVGPNTRLEVVTEGILTRMIQRDPELSGVGLA
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNERLQRLLPEAPVIVSEGRA
FPVERRFLPLPAHQRFDEAVAVAAAELLRSENGSMLLFLPGVGEIQRVQERLAERVASDV
ILCPLYGALPLSEQRKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDA
RTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLLAKEQAERAAAQGDPEILQSDLSSL
LLELLQWGCQDPAQLSWLDLPPATNLAAARRLLTDLSALEGERLSAHGRKMAALGNDPRL
AAMLTAAEDADGAATAAKLAAILEEPPRGGNSDLSAAFARQQGNWQQRAQQLMKRLAVRG
GQPDADSIAALLASAFADRIAHRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQG
SASPDARILLALPVDIHALIEQCPALARRSDIVEWDEALGTLKAWRRTCIGRLVIKTQPL
AKPSEEELHQAMLNGIREKGLSVLTWTPEAEQLRLRLHCAARWLPEEAWPAVDEASLLAS
LEQWLLPQMAGVHSLRALKALDVRQALQNWLPWPLRQKLDSELPTHYTVPTGSRIAIRYH
DENPPALAVRMQEMFGEATTPTIAQGRVPLVLELLSPAQRPLQITRDLGAFWQGSYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcattgccggttgccgccgtcctccctgaacttctttctgccctgcggcatgcg
ccgcaggttctgcttaatgcgccaaccggcgccgggaaatccacctggctgccgctgcaa
atcctcgccgaaggtaacatcaacggacgcataatcctgctggagccgcggcggctggcc
gcgcgtaacgtggcgcagcggctggcggaactgctgggagagaagcccggcgagaccgtg
ggctatcgcatgcgcgcggagacctgcgtcgggccgaacacgcgcctcgaagtggtgacg
gagggcattttaacgcggatgatccagcgcgatccggagctgagcggcgtggggctggcg
atcctcgatgaattccacgaacgcagcctgcaggcggatctggcgctggcgctgctgctc
gacgttcagcaggggctgcgcgacgatctcaaactgctgattatgtcggcgacgctggac
aatgaacgcctgcagcggctgctgccggaggcgccggttatcgtctctgaagggcgcgcg
tttccggttgagcggcgttttctgccgctgccggcccatcagcgctttgacgaggcggtg
gcggtggccgccgcggagctgctgcgcagcgaaaatggctcaatgctgctttttctgccc
ggggtgggagagattcagcgcgttcaggagcggctggcggagcgggtggcgagcgatgtg
atcctttgccccctgtacggcgcgctgccgctgagcgagcagcgtaaggcgatactgccc
gcgcccgccgggatgcgcaaagtggtgctggcgaccaatatcgccgagaccagtctgacc
atcgaggggattcggctggtggtggatagcgcccaggagcgcgtcgcccgctttgacgcc
cgcaccgggctcactcgcctggtgacgcagcgcatcagccaggcctcaatgacccagcgc
gccggacgcgccgggcgtctggaaccggggatctgcctgcatctgctggctaaagagcag
gccgagcgcgcggcggcgcagggcgacccggaaattctgcaaagcgatctgtcgtcgctg
ctgctggagctgctgcagtggggatgccaggacccggcccagctcagctggctggatctg
ccgcctgcgaccaacctggcggcggcccggcgtctgctcaccgacctttctgcgctggaa
ggcgagcggctgtcggcgcacgggcgcaaaatggcggcgttgggcaacgatccgcgcctg
gcggcgatgctgaccgcggcggaggatgccgatggcgccgccacggcggctaaactggcg
gcgatccttgaagagccgccgcgcggcggcaatagcgatcttagcgcggcgtttgcccgt
cagcagggtaactggcagcagcgggcgcagcagctgatgaaaaggctggcggttcgcggc
ggtcagcccgatgccgacagcatcgcggcgctgctggcctccgcttttgccgaccgtatc
gcccatcgtcgcggccaggaggggcgctaccagctggctaacgggatgggggcgatgctc
gacgccgacgatgcgctgggccgccacgaatggctgattgcgccgctgctgctgcaggga
agcgcatcgccggacgcgcggatcctgctggcgctgccggtcgatattcacgcgttgatt
gagcagtgtccggccctggcccggcgttccgatatcgtcgagtgggatgaggcgttagga
acgctgaaggcctggcggcgcacctgtatcggacgcctggtgattaagacccagccgctg
gcgaagccgtcggaagaggagctgcaccaggcgatgctcaacgggatccgcgagaaggga
ctgagcgtgctaacctggacgccggaggcggagcagctgcgtctgcggctacactgcgcg
gcgcggtggctgccggaggaggcgtggccggccgttgacgaggcgtcgctgctggcctcg
cttgaacagtggctgctgccgcagatggcgggcgtccattcgctgcgcgccctgaaggcg
ctggacgtgcgtcaggcgctgcaaaactggctgccgtggccgctgcgccagaagctggac
agcgagctgcccacgcactatacggtgccgaccggtagccgcatcgcgattcgttatcac
gatgaaaacccgccggcgctggcggtgcggatgcaggagatgtttggcgaagcgaccact
ccgactatcgcccaggggcgcgtgccgctggtgctggagctgctttcgccggcgcagcgc
ccgctgcagatcacccgcgatttaggcgccttctggcaggggagctaccgcgaggtgcaa
aaagagatgaaagggcgctatcccaagcacgtctggcccgacgatccggccaataccgcc
ccgacccggcgcaccaaaaagtattcgtag
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