Kordiimonas sp. SCSIO 12610: KFF44_00510
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Entry
KFF44_00510 CDS
T08324
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
koz
Kordiimonas sp. SCSIO 12610
Pathway
koz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFF44_00510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koz03019
]
KFF44_00510
Enzymes [BR:
koz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFF44_00510
Messenger RNA biogenesis [BR:
koz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFF44_00510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
TRADD_N
CpsB_CapC
Motif
Other DBs
NCBI-ProteinID:
UTW55409
LinkDB
All DBs
Position
105542..106957
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AA seq
471 aa
AA seq
DB search
MAEFEQLGLGKPLLSAVNALDYEKPTAIQAAAIPHLLSGLDLIGIAQTGGGKSAAFILPL
LEKLSYYEDRPKPGMPRALILAPTRELAQQISTNVRDLSLGQKARQCVIFGGTPYKTQTH
ILQRGVDIVIATPGRLIDHLKKGNVYLDETEYFVLDEADRMLDMGFIDDVRSIARKLRQD
HQSVMFSATFSDAIRELSSTILNDPEFVEVARQATIADNLTHKILYTPREKKNELLLYLI
AKEKAERALVFTRTKAQADALADYLQSMDLNARSIHGDKPQRMRDRIIRQFRNDQINFLV
ATDVAARGIDVPDITHVFNTDVPLDAENYVHRIGRTARGGASGKAFTLCDKAEFKLVRAI
ENIIKQAIETETDHPFPLEIKKFKPKSRKSNTGTSNASKSKPGKKLTQGKKKSLAKKAKK
AAGRADIPKQKTTKRKETSTVTSRKQKSRTGTKRPQSAKSGGNSPMRRKPK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcagagttcgaacaacttgggcttggcaaaccgttattaagtgcggtaaatgccctt
gattacgaaaagccgactgctattcaggcggctgcgatcccacacttgctcagtggcctt
gacctcattgggattgcgcaaacgggcggcggcaaatcagcggcattcatcctgccactt
cttgagaagctatcatactatgaagaccgcccaaaaccgggaatgcctcgtgccctcata
ctcgcaccaacccgtgaacttgcacaacaaatctcaaccaacgtacgagatttatcattg
ggccaaaaggccaggcagtgtgtaattttcggggggacaccttataaaacacagacacat
atcctgcaacgcggtgtagatatcgttattgcaacaccgggtcgattaattgatcacctg
aagaagggtaatgtgtatttggatgaaaccgaatattttgtccttgatgaggccgaccgc
atgcttgatatgggcttcattgacgatgtgcgcagtatcgctaggaagttacgacaagac
catcaatctgttatgttttcagcaacattcagtgatgcaattcgagaactgtcatcaact
atcctgaatgatccagaatttgttgaggtagcgcgtcaggcaactattgcagacaatcta
acgcacaaaatcctatacacgccgcgtgaaaaaaagaacgaactgcttctgtatttaatt
gcaaaggaaaaagctgaacgagcgctggtgtttacacgcaccaaggcacaggctgatgcc
cttgctgattaccttcaaagtatggatttaaacgcccggtcaatacacggcgacaagcca
cagcgaatgcgcgaccgcattattcgccaattccgtaatgatcaaattaatttcctggtt
gccacggatgttgcggcacgcgggatcgatgtgccagatatcacccatgtctttaatact
gacgtaccgttggacgcggaaaactatgttcaccgaattggcagaactgcgcgcggcggt
gccagtggtaaggcattcactttgtgcgataaggctgagtttaaactggttcgggctatt
gaaaacattatcaagcaagcaatcgaaacagaaacggatcatccattcccgcttgaaatt
aaaaagtttaagcccaagtcgcgtaaatcgaatactggaacttccaatgcgtctaaaagc
aagcctggcaaaaagctaacgcaaggtaagaaaaagtctctggcaaaaaaagcgaagaaa
gcagccggtcgcgcggacatccccaagcaaaaaacaacaaaacggaaagaaacttcaaca
gttacgagccgaaaacaaaaaagccgaacgggtaccaaacgcccacaatctgctaaaagt
gggggtaatagcccaatgcggcgtaagcctaaataa
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