Kordiimonas sp. SCSIO 12610: KFF44_08525
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Entry
KFF44_08525 CDS
T08324
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
koz
Kordiimonas sp. SCSIO 12610
Brite
KEGG Orthology (KO) [BR:
koz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
koz03016
]
KFF44_08525 (rnd)
Enzymes [BR:
koz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KFF44_08525 (rnd)
Transfer RNA biogenesis [BR:
koz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KFF44_08525 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
UTW56898
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All DBs
Position
complement(1858167..1859330)
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AA seq
387 aa
AA seq
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MTPITTTESLQELCTRLSKAEFITVDTEFLRDNTYFPKLCLIQVADDHGAHAIDPLAEDI
DLAPFFDLMSNESVMKVLHASRQDFEIFYNLTGALPKPVFDTQIAAMVCGFGDSVGYETL
VTKIVKAQLDKSARYTDWSRRPLTETQLSYALGDVTHLRDIYRHFVAELDRTNRHSWVEE
EMAVVLDPSIYFIEPEAAWLRMKIRTNKPRFLGVLRELAKWREIEAQTRDIPRNRVAKDE
TLFEVAAHPPKNADYLDKIRGLPKGFSRSRAGKSMLEAVQTALAIPDDQLPKIEKVKPRP
ATPPMADLLKVLLKIKCQETGVAPKLIASSQEIDAWAASPRREDVRPLKGWRRQIFGDDA
LKLMSGNLALTALKGEIDIVELEEDNE
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccatcactacgaccgaaagtttacaggaactttgtacccgcctaagcaaagca
gagtttattacagtagatactgagtttcttcgcgacaacacctacttccccaagctttgc
ctaattcaggtcgctgatgatcatggtgcacatgcgattgacccgcttgctgaagatata
gacctggcgccattttttgatctgatgtcaaacgaatctgtgatgaaggttttgcatgca
agtcgccaggattttgagattttctacaatctaacaggtgcgttacccaagcccgtattt
gacacacaaattgccgcaatggtttgtggttttggcgactcagtgggttacgaaacactt
gttacaaaaatcgttaaagcgcaactggataagtcagcacgttatacggattggtcacgc
cgtccgttgacggaaacgcagttatcgtacgcgctcggcgatgttacgcatttacgcgat
atttataggcactttgttgcggagcttgaccgcaccaacaggcattcttgggtcgaagaa
gaaatggctgtggtcttggacccttctatttatttcatcgagccagaagctgcatggctt
cgcatgaagatcagaaccaataagccacgctttttgggggttctccgtgaacttgcaaaa
tggcgtgaaatcgaggcacaaactcgtgacataccacggaaccgcgtcgcgaaagatgaa
accctgtttgaggtcgcggcgcacccgcctaaaaatgcagactatcttgataagatcaga
gggcttcctaaaggcttcagcagatcgcgtgcaggtaaaagcatgctggaggccgttcaa
acggcgcttgcaatccccgatgatcagttacccaaaattgaaaaggtaaagccacgccct
gcgacgcccccgatggctgatctattaaaagttcttttgaaaattaaatgccaagaaacg
ggtgttgcaccaaaacttatcgcttccagtcaggaaatagacgcttgggctgcaagccca
cggcgcgaagatgtgcgcccccttaaggggtggcgacgtcaaatttttggcgacgatgca
ctgaagctcatgtctggcaacctagcattgactgcgctgaaaggcgaaatcgatattgtc
gaacttgaagaagataacgagtaa
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