Kordiimonas sp. SCSIO 12610: KFF44_10940
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Entry
KFF44_10940 CDS
T08324
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
koz
Kordiimonas sp. SCSIO 12610
Pathway
koz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
koz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KFF44_10940 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
koz03021
]
KFF44_10940 (rpoB)
03400 DNA repair and recombination proteins [BR:
koz03400
]
KFF44_10940 (rpoB)
Enzymes [BR:
koz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KFF44_10940 (rpoB)
Transcription machinery [BR:
koz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KFF44_10940 (rpoB)
DNA repair and recombination proteins [BR:
koz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KFF44_10940 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UTW54333
LinkDB
All DBs
Position
complement(2329675..2333772)
Genome browser
AA seq
1365 aa
AA seq
DB search
MATSFTGRKRVRKDFGRIFEVTEMPNLIEVQRQSYDHFFKPGATEEERLSSGLEKVLKSV
FPIQDFAGTASLEYVRYELEEPKYDVEECQQRDITYAAPLRVTLRLIVFEIDPETEAKSV
LDIKEQDVYMGDLPMMTDNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAA
RVIPYRGSWLDFEFDAKDIVNVRIDRRRKLPATTLMYALGLSSEDILHYFYDTMSYTRAE
GGWRVPFNADAWRGQKPDFDLVDADSGEVVVEAGKKITPRLVKKLESGGVEGILVPEDMI
IGQFAADDIINENTGAIYVEAGDELTEETIEALSATGVDEIRVLNVDDAATGVFLRNTLK
ADKVETLDGALAEIYKVMRPGEPPTKETAEALFYSLFFDAERYDLSDVGRVKMNMRLNLD
CEDTVGVLRREDILETLKTLISLKNGQGEIDDIDHLGNRRVRSVGELMENQYRIGLLRME
RAIRERMSSVDIDTVMPHDLINAKPVVASVREFFGSSQLSQFMDQTNPLSEITHKRRMSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYAQVNKYGFIESPYR
KVVDGKVTEEVIYLSAMEETKYTVAQANADLNDDGSFANDLVSCREAGEFIMSQPGNIDL
MDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESVVARDS
GAAIAARRTGIVEQVDATRIVIRATEDLDPGKSGVDIYTLQKFQRSNQNTCINQRPLVKV
GDEIRKGDIICDGPSTELGDLALGRNALVAFMPWNGYNFEDSILISERIVKEDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVGEEGLKNLDEAGIVYIGAEVHPGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGVDKDERALTIEREEI
ERLTKDREDERGILERNIYGRLKPLLLGRTVTSGNKDLKKGNVVTEEALAELTKIQWWDI
AVDDEEAMTTIEALRGQFDESRASLQQRFDIKIEKLQRGDELQPGVLKMVKVFVAVKRKL
QPGDKMAGRHGNKGVISRIMPIEDMPHLEDGTPVDVVLNPLGVPSRMNVGQILETHLGWA
SRGLGRQIDGMLDAYRHGAENLDDMRDKFKRVYGDKQYESDVAELNDDQIIELAGNLTNG
VPMGTPVFDGAVEQNIVELLEEAGLDGSGQVDLYDGRTGEKFDRKVTVGYIYMLKLHHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVS
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLCLNVELITGTE
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttcatttactggtcgtaagcgtgtacggaaagatttcggtcgtattttcgag
gtgactgagatgccaaaccttattgaggttcagcgtcaatcctatgaccatttctttaag
ccgggagctacggaagaagaaagactgagttcagggctggaaaaagttttgaaatcagta
tttccgatacaagattttgcgggaactgcctcgcttgaatatgtccggtatgagcttgaa
gagcccaagtatgacgttgaagaatgtcagcagcgcgatattacatacgcagctccgctt
cgcgttacactacgcctgattgttttcgagattgacccggaaacagaagcgaaatccgtt
ctcgatattaaagaacaagatgtatacatgggcgacctgcctatgatgactgataacggt
accttcgttgttaatggtacggagcgtgttatcgtatctcaaatgcaccgttctcctggt
gtgttcttcgatcatgataaagggaaaacacattcatcaggtaaattcctgtttgctgct
cgtgtaattccttaccgtggctcttggctcgattttgaatttgatgccaaagacatcgta
aacgttcgtattgaccgtcgccgtaaattacctgcgacaacgttgatgtatgcgcttggt
ctgtcatctgaagatattcttcattatttctatgacactatgagctatacacgcgcagaa
ggtggatggcgtgtgccgtttaacgctgatgcatggcgtggtcagaaacctgattttgat
ctggttgacgccgatagcggcgaagttgtcgtagaagctggtaagaagatcacacctcgt
ttggtgaagaagcttgaaagtggtggtgttgaaggaattttggttcctgaagatatgatc
atcggtcaatttgctgctgacgatatcatcaatgaaaacactggtgcgatctatgttgaa
gctggtgacgagttgacagaagaaaccattgaagctctctctgcaacaggtgttgatgaa
attcgcgttctcaatgttgatgacgctgcaacaggtgtgttccttagaaatacgcttaaa
gcagacaaggttgaaacgcttgatggtgcattagctgaaatctacaaagttatgcgcccg
ggtgagccgcctacaaaagaaacagcggaggcattattctatagcctgttctttgatgca
gagcgttatgacctttctgacgttggccgtgtgaaaatgaacatgcgcttgaacctcgac
tgtgaagacacagttggtgttcttcgccgtgaagatattcttgaaacgcttaagacactt
atctctcttaagaatggtcagggcgaaatcgacgatattgaccaccttggtaaccgccgt
gttcgctcggttggtgagttgatggaaaatcaatatcgcatcggtcttcttcgtatggag
cgtgcgatccgtgagcgtatgtcatctgttgatatcgatacagtgatgccgcatgacctt
atcaatgcgaagcctgttgtggcttctgtacgtgaattctttggttcttcacagctttcg
cagtttatggaccagacgaacccactatcagaaattactcacaagcgtcgtatgtcagcg
cttggccctggtggcttgacgcgtgagcgtgcgggctttgaggttcgtgacgtacaccca
acgcactatggtcgtatctgcccgattgagacaccagagggaccaaacattggtttgatc
aactcgttggctacatatgcgcaggttaacaagtatggctttattgaaagcccatatcgt
aaagttgttgatggcaaggtaacagaagaagttatctacttgtcggcaatggaagaaacc
aaatacacagttgcgcaggcaaatgctgatttgaatgacgatggtagtttcgcaaatgac
cttgtgtcatgtcgtgaagccggcgagtttattatgtcacagcctggcaatattgacctg
atggacgtatcaccgaagcagcttgtatctgttgcggcatccttgatcccgttccttgaa
aacgatgacgcgaaccgcgcattgatgggatcaaacatgcaacgtcaggccgttccgctt
gtgcgtgctgaagcaccgtttgttggaactggtatggaaagcgttgttgctcgcgatagt
ggtgctgcgattgctgctcgccgtacaggtattgtggagcaggttgacgcaacacgtatc
gttatccgcgcaacagaagatttggatcctggtaagtcaggcgttgatatctacacgctt
cagaaattccagcgttcaaaccagaacacatgtattaaccagcgtccacttgtgaaagtg
ggtgatgaaatccgcaaaggcgacatcatttgtgatggaccgtctacggaacttggtgat
ctggcgcttggccgtaacgcacttgtggcgttcatgccttggaatggttacaactttgag
gattcaatccttatttcagagcgtatcgtgaaagaagatgtctttacttcgatccatatc
gaggaattcgaagtgatggcacgtgatacgaagcttggtccagaggaaatcacacgtgat
attcctaacgtgggtgaagagggcctgaagaaccttgatgaggctggtatcgtatacatc
ggtgcagaagttcatcctggtgatatccttgttggtaagattacaccaaaaggcgaaagc
ccaatgacgccagaggagaaactccttcgtgcgatcttcggtgagaaagcttctgatgtt
cgtgatacatcacttcgtttgccacctggtgttgctggtacaattgttgaggttcgtgtc
ttcaaccgtcacggtgttgacaaggatgagcgtgctctgactatcgaacgtgaagagatt
gagcgtcttacgaaagaccgcgaagatgagcgcggtattcttgagcgcaacatctatggt
cgtttgaagccattgcttctgggccgcacggttacttcaggcaacaaagatcttaagaaa
ggtaatgttgttacagaggaagccctcgctgaacttactaaaattcagtggtgggatatc
gccgttgatgatgaagaagcgatgacaactatcgaagcgcttcgcggtcagtttgatgaa
agtcgtgcgtcacttcagcaacgttttgatatcaagattgaaaaactccagcgtggtgac
gagcttcagcctggcgtcttgaagatggttaaagtcttcgtagccgttaagcgtaagctt
cagcctggtgataagatggctggtcgccacggtaacaaaggggttatctctcgcatcatg
ccgattgaagatatgcctcaccttgaggacggcacaccagttgatgttgtgctgaacccg
cttggtgtaccatcacgtatgaacgtggggcagattttggaaactcaccttggttgggca
tcacgcggtcttggccgtcagattgatgggatgctggatgcataccgtcacggcgctgaa
aaccttgatgatatgcgtgataagttcaagcgcgtttacggtgacaagcagtatgaaagc
gatgttgctgaattgaatgatgatcagatcattgagctcgctggtaaccttacgaacggt
gttccaatgggtacgccggtgtttgacggtgctgttgagcagaatatcgttgagcttttg
gaagaagcaggccttgacggttctggtcaggttgatctttatgatggtcgtactggtgaa
aaattcgaccgtaaagtaactgttggttacatttacatgttgaaactgcatcaccttgtt
gatgataagatccacgcccgttcaattggcccatacagccttgtgacccaacagccgctt
ggtggtaaggcccagtttggtggtcagcgcttcggtgagatggaagtgtgggcacttcag
gcatatggtgctgcttatacgcttcaggaaatgttgactgtgaaatcggatgacgtttct
ggtcgtacgaaagtctatgaagcaattgttcgcggtgatgatacattcgaggcaggtatt
ccagaatccttcaacgtacttgtgaaggaaatgagatcgctttgcttgaatgttgaattg
atcacaggcactgaataa
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