Kordiimonas sp. SCSIO 12610: KFF44_13495
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Entry
KFF44_13495 CDS
T08324
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
koz
Kordiimonas sp. SCSIO 12610
Brite
KEGG Orthology (KO) [BR:
koz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
koz03016
]
KFF44_13495
Enzymes [BR:
koz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KFF44_13495
Transfer RNA biogenesis [BR:
koz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KFF44_13495
Prokaryotic type
tRNA splicing ligases
KFF44_13495
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
UTW54809
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All DBs
Position
2944674..2945909
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AA seq
411 aa
AA seq
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MSEQNYEVIASEGHAPVKMWTQGVPVDEGAKTQLTKAASMPFIHKHIAVMPDVHVGIGAT
IGSVIPTKNAIIPAAVGVDIGCGMMAAKTDLTANDLPDNLFGIRTAIERAVPHGMTPSRS
RRKGRDKGSWHDIPELSAKAWGGLVDRFDRICENMPAIKNTNNVNHMGTLGTGNHFVEVC
LDEHDQVWIMLHSGSRGVGNAIGRRYIELARKDMEKWMINLPDKDLAYFPEGTDHFNDYV
FAVEWAQDYARKNREVMMANVIESIQVELGRMFNADVEAVNCHHNYVTRENHFGENVFVT
RKGAVRARKGDLGIIPGSMGARSYIVRGLGNEESFCSCSHGAGRVMSRTEAKKRVSLEEH
ITATADVECRKDKGVIDETPSAYKNIDDVMEAQKDLVEIMYTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacagaattacgaagttattgcaagcgaaggccatgcccctgtcaaaatgtgg
acacagggtgtgccagtagatgaaggtgcaaaaacccagcttaccaaagccgcatctatg
ccgttcattcacaaacatatcgccgttatgcctgatgtgcacgttggtattggcgctaca
attggttcggtcattccaacgaaaaatgctattattccagcggctgttggcgttgatatc
ggctgcggcatgatggctgccaaaacagatttaacagctaatgacttgccggataatctt
tttggtatccgaaccgcgattgagcgcgctgtcccgcatggcatgacaccgtcacgaagc
cgcaggaaaggccgcgataaaggatcatggcatgatattccagaactctcagcgaaagct
tggggtggccttgtggataggtttgatcgtatctgcgagaacatgccagcgatcaaaaac
accaataacgtaaaccacatgggtacccttggaaccggcaatcactttgtcgaagtatgc
cttgatgaacatgatcaggtttggattatgttgcattcgggctcacggggcgttggtaat
gcaattggtcgccgttatattgaacttgcacgcaaggacatggaaaaatggatgattaac
ttgccggataaggaccttgcgtatttcccagagggcacagaccatttcaatgactatgtt
tttgccgttgaatgggcgcaggattatgcccgtaaaaaccgcgaggtcatgatggcaaat
gtgattgaaagtattcaagtcgaacttggccgcatgttcaatgctgatgtggaggcagta
aactgccaccacaactatgtgacacgcgaaaatcacttcggtgaaaatgttttcgtgaca
cgcaagggcgctgtgagagcgcgcaaaggcgatttgggtattattccaggctcgatgggc
gcacggtcatatatcgtccgcggtcttggtaatgaagaaagtttctgttcatgcagccac
ggcgctggccgagtgatgagccggacagaggccaaaaaacgagtgagccttgaagaacat
atcacggcaaccgccgatgttgaatgccgcaaggacaaaggtgttatcgacgaaacaccg
tcggcttacaaaaacatcgacgatgtaatggaagcacagaaagaccttgttgagatcatg
tatacattgaagcaagttgtatgcgttaaggggtaa
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