Keratinibaculum paraultunense: JL105_05895
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Entry
JL105_05895 CDS
T07032
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
kpar
Keratinibaculum paraultunense
Pathway
kpar03410
Base excision repair
kpar03430
Mismatch repair
kpar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kpar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JL105_05895 (recJ)
03430 Mismatch repair
JL105_05895 (recJ)
03440 Homologous recombination
JL105_05895 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpar03400
]
JL105_05895 (recJ)
DNA repair and recombination proteins [BR:
kpar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JL105_05895 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JL105_05895 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JL105_05895 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QQY78757
LinkDB
All DBs
Position
complement(1184338..1186107)
Genome browser
AA seq
589 aa
AA seq
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MEKWYIRNVKGNLDKISKSLGISKFLSKLLLNRHITSYRLMDSFINPSLDKLHSPWLMKD
MDKGVNLIVESIKKGEKIRISGDYDQDGNSAILTLYKGLRKCGAKVDYVIPHRIMDGYGI
NERIVKEAKRDGIDLIITCDNGISAFEPIRLAKDLGIKVIVTDHHDIAYKEDEDGIKKYI
LPDAEAVINPKRWDCKYPFKELCGAGVAFKLIQALYMKMNINIEESYKLLEFVAMGTVCD
VVDLVDENRIIVKEGLSRINNTQNLGLKALIKATGLEGKNINTYSLGFIIGPCINASGRL
DKADIAVELFLTEDQDRAQKYANRLHELNKKRKIMTEKGYERIVNQIESTDLKKQSVLVI
FEPQIHESVAGIIAGRVKDKYYKPTIVLTQSKEEGIAKGSGRSIEEYDMFEEISNHKELL
VTFGGHPMAAGLSLDISSIDEFRYKLNKDVSLTVDDLTPKVYIDMHLPLDYINFALIEEL
EKLEPFGKGNPKPLFAEKNVKIKRGVILGNEQNVLKLLLLTKKGRIIDGIYFGDIEEFER
QMCRKFGQEELDKMYRGLSNNIMLDIIYTPVINEYMGKRNIQINIQNYR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaatggtacataagaaatgtaaaggggaatttagataaaatttctaaaagttta
ggtataagtaagtttttatctaaattgttattaaatagacatattactagttatagatta
atggatagttttattaatccaagtttagataaattacatagtccttggttgatgaaagac
atggacaaaggagtaaatttaatagtagaaagtattaaaaaaggcgaaaagataagaatc
tccggggattatgatcaggatggtaattcagctatattaactctctataaaggactaaga
aaatgtggtgcaaaggttgattatgtaattccccatagaataatggatggatatggaata
aatgaaagaatagttaaagaagctaaaagggatggaatagatttaattattacctgtgat
aatggaatatcagcatttgaacctataagattagctaaagatttaggcataaaagtcata
gttacagatcatcatgatatagcttataaagaagatgaagatggaataaagaagtatatt
ttgccagatgcagaggcagtcattaatcctaagagatgggattgtaaatatccctttaaa
gaattatgtggggcaggagtagcttttaaattaatacaagctttatatatgaagatgaat
ataaatattgaggagtcatataaattattggaatttgtagctatgggtacagtttgtgat
gtagtagatttggttgatgaaaatagaataatagttaaagaaggtttaagtagaataaat
aacactcaaaatttgggattaaaagctttaattaaagccacaggattagaagggaaaaat
attaatacttattctctaggttttataataggaccttgtattaatgcttctggaagattg
gataaagctgatattgctgtagagttgtttttaactgaagatcaagatagagcccagaaa
tatgctaatagattacatgaattaaataaaaaaagaaaaattatgacggaaaaaggttat
gaaaggatagtaaatcaaatagaaagtacagatttaaaaaaacaaagtgtattagttata
tttgaaccccaaattcatgagagtgtggcaggaattattgctggtagggtaaaggataaa
tattataagcctactatagttttaactcaatctaaagaagaaggtattgcaaagggttca
ggaaggtccatagaagaatacgatatgtttgaggaaatatctaatcataaggaattattg
gtaacttttggaggtcatcctatggctgcaggactttcattagatatttctagtatagat
gaatttagatataaattaaacaaagatgtgtctctaactgttgatgatttgacccctaaa
gtttatatagatatgcatcttccattggattatattaattttgctttgattgaggagtta
gagaaactagaaccttttggaaagggtaatcctaagcctttatttgccgaaaaaaatgtg
aagattaaaagaggggttatattaggtaatgagcaaaacgtacttaaattattattattg
actaaaaaaggccgtataatagatggtatctattttggcgatatagaagaatttgaaagg
caaatgtgcagaaaatttggacaagaagaattagataagatgtataggggattaagtaat
aatataatgttggatataatatatacccctgtaataaatgaatatatgggtaaaagaaat
attcaaattaatattcaaaattatagataa
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