Keratinibaculum paraultunense: JL105_09930
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Entry
JL105_09930 CDS
T07032
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kpar
Keratinibaculum paraultunense
Pathway
kpar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL105_09930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpar03400
]
JL105_09930 (mfd)
Enzymes [BR:
kpar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL105_09930 (mfd)
DNA repair and recombination proteins [BR:
kpar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JL105_09930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QQY79496
LinkDB
All DBs
Position
complement(2029177..2032695)
Genome browser
AA seq
1172 aa
AA seq
DB search
MQNIFIDPLKNLASYKKLLEDIKLNKTPISTHGIIDENLGHIVYALNQDMKKQVLVITHD
DNKARRIYEDIKNFDENIVEFYPTREILFYKVDAISTEVNNQRLRVLSRLLSKEPVIVIA
SIESLLTKLIAPDIFKKYMINIKQGDIVDLEGLTEKLISCGYERETMVEGVGQFSIRGGI
LDFYSPNYDTPFRIELFDDEVDSIRSFDLLSQRSLEVVDSILISPVKEVFIIDEYRNNII
SNIKKDINRGIKKLKTDSEVRTTIEDKFESYLEEIKEKLHISNMDMITPYIPENYLSSIL
KYMDFDGLIFMDEPERLRERYDSIKEQFLLQYSQAFEVGEALSKHENMLYEYMHIVEDIN
EKVCITNTALIKQDTLFKPKSILKFTSKSMQYFHSNMKILKDELEHYKYRGYKVIILAGT
KKKAKILYDNLMNMGLECSYIEDTDREIKSGQVFITTGKITRGFEYSDIKFAIISEGEIY
GTYKGRTKKTKKRSKEETISFSDLNIGDYVVHENHGIGKYEGIEQLDIQGVKKDYLTIAY
KGNDKLYVPVEQMNLIQKYIGADSVKPKINRLSSPEWAKTKQRAKKAVEDMAKDLLELYA
KRESQQGYAFSKDTPWQREFEDLFPYEETEGQLRSIEEIKRDMESNRPMDRLLCGDVGYG
KTEVALRAAFKAVMDGKQVAFLVPTTILAQQHYNTMIERFDPFPIKIAMLSRFRTALNQK
DIVDGLRKGTIDIVVGTHRLLSKDVAFKDLGLLIIDEEQRFGVKHKEKLKKLKENVDVLT
LTATPIPRTLHMSLIGIRDMSIIEEPPEERYPVQTYVVEFNEQMIREAILKEIERGGQVY
FVYNRVDTIDKMAIKLKDLVPEANIAVGHGQMSERQLEKIMMDFISMKYNVLVSTTIIET
GLDIPNVNTIIIYNADKMGLSQLYQLRGRVGRTNRVAYAYLTYEKDKVLTEIAEKRLRAI
KDFTEFGSGFKIAMRDLEIRGAGNLLGVEQHGHIEAIGYDLYVKFLNETIKKLKGEKIEE
VVNTSIDLNIDGYIPTSYIEDEEQKIDIYKKIAVIENLEDYRELIDELIDRFGDLPIEVK
NLLDISYIKNIAGTCHINNIYQSEDTLILEFSSIEYISPDLIHYLSKEYGRRISFDLSNN
PSFKYRFRKNMLTELKELVEKISGFHNMTNNI
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatatatttatagatccactaaaaaatttagcttcttataaaaagcttttggag
gatataaaactaaataaaactcctatatctacccatgggataattgatgaaaacttaggg
catatagtttatgctttaaatcaagatatgaagaaacaagtattagtcatcactcatgat
gataataaagctaggaggatttatgaggatattaaaaattttgatgaaaatatagtagag
ttttatcctactagagagatacttttttataaagtagatgcaataagtacagaggtaaat
aatcaaagattgcgagttctttctagattgttatccaaagaaccagttatagtaattgcc
tcaatagaaagtttactcactaaattaatagcaccagatatatttaagaaatatatgata
aatattaaacaaggagatatagtagatttagagggattaacagagaaacttatatcctgt
ggatatgaaagggagacaatggtagaaggagtagggcaatttagcattagaggtggaata
ttagatttttattcaccaaattatgatactccttttagaatagagctgtttgatgatgaa
gtagattctattagatcctttgacttattaagtcaaagatcattagaagtagtggattca
atattgatatctcctgtaaaagaggtatttatcatagatgagtatagaaataatataata
tctaatataaaaaaggatataaacagaggaattaaaaagctgaaaacagattcagaagta
agaactaccatagaagataaatttgaaagttatttagaagagataaaagaaaaacttcat
atatctaatatggatatgataactccttatatacctgaaaattatttatccagtatatta
aaatatatggattttgatggtttaatatttatggatgaacctgagagattaagagaaagg
tatgacagtataaaggagcaatttttacttcaatattcgcaagcttttgaagtaggtgaa
gcattatcgaaacatgaaaatatgctatatgaatatatgcatatagttgaagacatcaat
gaaaaggtgtgtataactaatactgcattaattaaacaagatacattatttaagcctaaa
tctatattaaaatttacttccaaatccatgcaatatttccacagtaatatgaaaatttta
aaagatgaattagaacattataaatatagaggatataaggtaataatacttgctggcaca
aagaaaaaagcaaaaatactatatgacaatcttatgaatatgggattagaatgcagctat
atagaggatactgatagggagattaaaagtgggcaagtattcataacaactggaaaaata
actaggggatttgaatattcagatattaaatttgccattatatctgaaggtgaaatatat
ggaacttataagggaagaaccaaaaagacaaaaaagagatccaaagaagagactataagt
ttttctgatttaaatattggggattatgttgtgcatgaaaatcatggtattggaaaatac
gaaggaattgaacaattagatattcaaggagtaaagaaagactatttgactatagcctat
aaaggaaatgataaattatatgtgcctgttgagcagatgaatttaattcaaaaatatatt
ggtgctgattctgtaaagcctaaaatcaatagacttagcagtcctgaatgggctaaaact
aaacaaagagcgaaaaaagctgtagaagatatggctaaggatttacttgaactatatgct
aaaagggaaagtcagcaaggatatgctttttcaaaggatactccatggcaaagagaattt
gaagatttgtttccctatgaggaaacagaggggcaacttagaagtatagaagaaataaaa
agagacatggaaagtaatagaccaatggataggctactatgtggagatgtgggatatggg
aaaacagaagtagctctaagggcagcttttaaagcagtaatggatgggaaacaggtggca
tttctagtacctactaccatattagctcaacagcattacaatactatgattgaaaggttt
gatccattccccataaaaatagctatgttaagtagatttagaacagctttaaatcagaaa
gatatcgtagatggacttagaaaagggaccatagatatagtagtaggaactcatagatta
ttatctaaagatgtggcgtttaaagatttaggtttacttataatagatgaagaacaaaga
tttggagttaagcataaggaaaaattaaaaaaacttaaagaaaatgtagatgtattaact
ctcacagctacacctattcccagaactcttcatatgtcccttataggtattagagatatg
agtattatagaagaacctccagaagaaagatatcctgttcaaacttatgtggtggagttt
aatgaacagatgatacgagaagctatattaaaggaaatagaaaggggagggcaggtatat
tttgtttataatagggttgatactatagataagatggctattaaattaaaggatttagtt
ccagaagctaatattgcagtaggacatgggcagatgagtgaaagacaattagaaaagata
atgatggattttatatctatgaaatataatgtattagtaagcaccactattattgaaaca
ggacttgatatacctaatgtaaatactataataatatataatgcagataaaatggggcta
tctcagctatatcaattaagaggtagggtaggtagaacaaatagagtagcatatgcttat
ttaacatatgaaaaggataaagtattgacagaaatagcagaaaagaggcttagagctata
aaggattttacggaatttggttcaggctttaaaatagcaatgagagatttagaaataaga
ggtgcaggaaatcttttaggagtagagcaacatgggcatattgaagctattggttatgat
ctatatgtaaaatttttaaatgaaaccataaagaagttaaaaggagaaaagatagaagag
gtagttaatactagcattgatcttaatatagatggatatattcctacaagctatatagaa
gatgaagaacaaaagatagatatttacaagaaaattgctgttattgaaaatttggaggat
tatagggaattaatagatgaattgatagatagatttggagatttaccaatagaagtgaaa
aatttattggatatttcctatataaaaaatatagcaggtacttgccacattaataatata
tatcaatcagaagacacattaatattggaatttagttccatagaatatatatctcctgat
ttaatccattatctttctaaagaatatggaaggaggattagttttgatttatctaataac
ccttcttttaaatatagattcagaaagaatatgttaacggaattaaaggaattagttgaa
aaaattagtggttttcataatatgacaaataatatataa
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