Klebsiella pasteurii: LUW96_17880
Help
Entry
LUW96_17880 CDS
T08655
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpas
Klebsiella pasteurii
Pathway
kpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LUW96_17880 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpas03019
]
LUW96_17880 (rne)
03009 Ribosome biogenesis [BR:
kpas03009
]
LUW96_17880 (rne)
Enzymes [BR:
kpas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LUW96_17880 (rne)
Messenger RNA biogenesis [BR:
kpas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LUW96_17880 (rne)
Ribosome biogenesis [BR:
kpas03009
]
Prokaryotic type
rRNA processing factors
LUW96_17880 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UHC97591
LinkDB
All DBs
Position
complement(3789816..3793061)
Genome browser
AA seq
1081 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIETRQADVRVIIVPNDQME
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMAMPSDEEPAERKLPEQPALAAFVMPEAPPA
PAQEEPARTAATVTPAASAPKAAKPAQPGLVARFFSALKNMFSGAEETKPAEVQVEKKAE
EKSERQQERRKPRSNNRRDRNDRRDNRDNRDSRDNRAENSEGRESREENRRNRREKQQNA
EPREIRQTTVEDSEKGKARDEQQPRRERNRRRNDDKRQVQQEAKTQTREEPIVQDSEQEE
RVQTMPRRKPRQLAQKVRFESAAVEQVVEPVAAAQVTEAPVVQPETAAPRTELAKVDLPA
VVETAAEHDDNGEARESNGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACAS
PEMASGKVWIRYPVVRPQDQQQEDAPVQEFSVAAAEPIITPAAAAEPVVSEVIAPAAAED
SAAISEPVAVINEPEVSVVETTHPEVIATPVDEQPQLIAKADEAVVEDVVAEAVEVDAKD
AVEPEATAPVSEPVVAEEAPEVVEETPEVVEEAPVVSAPAPVAEPVVETKPAVDAAPVVK
VANRHATAPMTRAPAPDYVPEAPRQSDWVRPNFDFDGKGSAGGHSATHKATAGPTRPQSV
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcactcgtatagaacctagcctcgaagccgcgtttgttgattat
ggtgccgagcgtcatggtttcctccctcttaaagaaatcgcccgcgaatacttccctgcc
aactacaattctcatggtcgtccgaacatcaaggacgtgctgcgtgaaggtcaggaagtt
attgtccagattgataaagaagagcgtggcaataaaggcgccgcgctgacgacctttatt
agcctggcgggcagctatctggtgctgatgccaaataacccacgcgctggcggtatttca
cgccgcattgagggtgacgatcgcaccgaacttaaagaagcgctggccagccttgagcta
ccggacggcatgggacttatcgttcgcaccgcaggcgtcggcaagtccgccgaagcgctg
cagtgggacttaagcttccgcctgaaacactgggaagccatccagaaagccgcagaaaat
cgcccagctcctttcctgatccatcaggaaagcaatgtgattgtgcgcgctttccgcgac
tatctgcgccaggatatcggcgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacatcgcggcgctgggtcgtccggatttcagcagcaaaattaaactgtacact
ggggaaatcccgctgttcagccactatcagatcgaatcgcagattgaatccgctttccag
cgtgaagtgcgtctgccttccggtggttctatcgttatcgacagtaccgaagcgctgacc
gctattgatatcaactccgcacgcgccacccgcggcggcgacatcgaagaaacagcgttt
aacaccaaccttgaagcggcagatgaaatcgctcgtcagctgcgtctgcgcgaccttggc
ggcctgatcgttatcgacttcattgatatgaccccggttcgccatcaacgtgcggtggaa
aaccgcctgcgcgaagctgtccgtcaggaccgagcgcggatccagatcagccatatttca
cgctttggactgctggagatgtcgcgccagcgcctcagcccatcgctcggcgagtccagc
catcacgtctgcccgcgctgtagcggaacgggtaccgtgcgcgataacgaatcgctgtcg
ctttccattctgcgtttgatcgaagaagaagcgctgaaagagaacaccaaagaagttcac
gctatcgtgccggtgccgattgcttcttacctgctgaacgaaaaacgtgctgcggtaagc
gcgattgaaacccgtcaggccgatgtgcgcgtcattatcgtgccaaacgaccagatggaa
acgccgcactactccgttctgcgcgtgcgtaaaggcgaagaaacctccacgctgagctat
ctgctgccgaaactgcacgaagaagagatggccatgccttctgatgaagagccggctgag
cgtaaactcccggaacaaccagcgctggccgcttttgtcatgccagaagcccctccggct
ccggcacaggaagagccggccaggacagcggctaccgttacgcctgccgcatccgcaccg
aaggccgcaaaaccggcccagcctggtctggttgcccgcttcttcagcgcgctgaaaaat
atgttctccggtgcggaagagactaaaccggcagaagttcaggttgagaaaaaagcggaa
gagaaatccgaacgtcagcaggagcgtcgtaaaccgcgttctaacaaccgccgcgatcgc
aatgaccgtcgtgacaaccgggataatcgcgatagccgcgataatcgtgccgagaatagc
gaaggccgggaatctcgcgaagaaaaccgccgtaaccgtcgtgagaagcagcagaacgcc
gagccgcgcgaaattcgccagaccacggtagaagatagcgaaaaaggcaaagctcgcgac
gagcagcagccgcgtcgcgaacgtaatcgtcgtcgtaacgatgataaacgtcaggttcag
caggaagccaaaacgcaaacccgcgaagagccaatcgtacaggatagcgagcaggaagaa
cgcgtgcagactatgccgcgtcgtaaaccgcgccagctggcgcagaaggttcgtttcgaa
tctgctgccgttgagcaggttgtcgagccggtagccgcagcgcaggtaacagaagcgcct
gtcgtccaaccggaaaccgctgctccacgtactgaactggcaaaagtcgatctgccggcg
gttgttgagacagctgcggaacatgacgacaacggtgaagctcgcgaatctaacggcatg
ccgcgccgttcgcgccgctcgcctcgtcacctgcgcgtaagcggccagcgccgtcgtcgt
taccgtgatgagcgttatccgacacaatccccgatgccgctgaccgttgcctgcgcatca
ccggaaatggcgtctggtaaagtgtggatccgctatccggtggttcgcccgcaggaccag
cagcaggaagacgctccggttcaggagttctccgtcgctgcggctgagccgatcatcacg
ccagcggctgccgccgagccggttgtttctgaagtgattgcgccggcagcagccgaagat
agcgcagccatctccgaacctgtggcggtgattaacgaaccggaagtttcggtcgttgaa
actacccatccggaagttatcgccaccccggttgatgaacagccgcagctgattgcgaaa
gccgatgaagccgtagttgaagacgttgtcgcagaagccgtcgaagttgatgcgaaagac
gccgtcgagccggaagcaacggcccctgtgtctgaaccagttgtagccgaagaagcgcct
gaggttgttgaagaaacgcctgaggttgttgaagaagcgcctgtcgtttctgcgccagcg
ccagtagcggagccggtggttgagactaagccagcagtcgacgccgcgccggtagttaag
gtcgccaatcgtcacgcgacggcgccgatgacgcgtgcgcctgcaccggactacgtgcct
gaagcgccgcgtcaaagcgattgggttcgcccgaactttgattttgacggtaaaggctct
gctggcggccatagcgccacgcataaagccacagccggacctacccgtccgcagtccgta
gagtaa
DBGET
integrated database retrieval system
