Klebsiella pneumoniae subsp. pneumoniae KPNIH10: KPNIH10_23435
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Entry
KPNIH10_23435 CDS
T03788
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kpc
Klebsiella pneumoniae subsp. pneumoniae KPNIH10
Pathway
kpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPNIH10_23435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpc03019
]
KPNIH10_23435
03009 Ribosome biogenesis [BR:
kpc03009
]
KPNIH10_23435
Enzymes [BR:
kpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KPNIH10_23435
Messenger RNA biogenesis [BR:
kpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KPNIH10_23435
Ribosome biogenesis [BR:
kpc03009
]
Prokaryotic type
rRNA helicases
KPNIH10_23435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIA38807
LinkDB
All DBs
Position
complement(4785518..4787449)
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AA seq
643 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAF
SLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEELD
VETLAAALLKMAQGERSLIVPPDAPMRPRREFRDRDDRFDRRGDRNDRGPRGDREDRPKR
ERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP
GEVLQHFTRTRILNKPMNMQLLGDAQPRTERRGGGERREGGRGFGGERREGGRGFGGERR
EGGRGEGRRFSGERREGRAPRRDDASAPRRDDSAGRRRFGGDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcg
ctcaccgatctgggttacgaaaaaccatctccgatccaggctgagtgcattccgcatctg
ctggacggccgcgacgttctgggtatggcccagaccggtagcggtaaaaccgcagcattc
tctttaccgctgctgaacaacatcgatcctgagctgagagcaccgcagattctggtgctg
gcgccgacccgcgagctggcggtacaggttgctgaagcaatgacggaattctctaaacat
atgcgcggcgtgaacgtggttgccctgtacggcggccagcgttatgacgtgcagctgcgc
gccctgcgtcagggtccgcagatcgtcgtcggtaccccgggtcgtctgctggaccacctg
aagcgcggcaccctggacctctccaaactgagcggcctggtactggatgaagcagatgaa
atgctgcgcatgggctttatcgaagacgtagaaaccattatggcgcagatccctgaaggg
catcagaccgcgctgttctccgccaccatgccggaagctatccgtcgcattacccgtcgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgacgactcgcccggatatc
agccagagctactggactgcctacggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagactttgatgcggcgattatcttcgtccgtaccaaaaacgcgaccctggaa
gtagctgaagcgctggagcgtaatggctacaacagcgcggcgctgaacggcgacatgaac
caggcgctgcgtgagcagactctggaacgcctgaaagatggtcgtctggatatcctgatt
gcgactgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtggtgaactac
gacatcccaatggattctgaatcctacgttcaccgtatcggccgtactggtcgtgccggt
cgtgctggccgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccattcctgaagtggaactgcctaacgcggagctgctgagc
aagcgtcgtctggaaaaattcgccgcgaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcactgctggcgaaaatccagccgacggcggaaggtgaagagctggac
gtggaaacgctggctgctgcgctgctgaagatggctcagggcgaacgttcgctgatcgtt
ccgccggacgcgccgatgcgtccacgtcgtgaattccgcgatcgtgacgatcgtttcgac
cgtcgtggcgaccgtaatgatcgcggcccgcgcggcgatcgcgaagatcgtccgaagcgt
gagcgtcgtgacgtgggtgacatggagctgtatcgcattgaagtgggtcgcgatgacggc
gttgaagtgcgtcatatcgttggcgcgatcgccaatgaaggcgatatcagcagccgttac
atcggtaacatcaagctgttcgcttctcactccaccattgagctgccgaaagggatgccg
ggcgaagtgctgcagcactttactcgtacccgtatcctgaacaagccgatgaacatgcag
ctgctgggcgatgcgcagccgcgcaccgaacgtcgtggcggcggtgagcgtcgcgaaggc
ggccgtggctttggcggcgagcgtcgtgaaggcggccgtggcttcggtggcgaacgtcgt
gaaggcggtcgtggtgaaggacgtcgtttcagcggcgaacgtcgtgaaggccgtgcgccg
cgtcgtgacgatgcatccgcgccgcgccgcgatgactcagccggccgccgtcgcttcggt
ggcgatgcgtaa
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