Kangiella profundi: CW740_02485
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Entry
CW740_02485 CDS
T05254
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kpd
Kangiella profundi
Pathway
kpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CW740_02485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpd03019
]
CW740_02485
03016 Transfer RNA biogenesis [BR:
kpd03016
]
CW740_02485
Enzymes [BR:
kpd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CW740_02485
Messenger RNA biogenesis [BR:
kpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CW740_02485
Transfer RNA biogenesis [BR:
kpd03016
]
Prokaryotic type
tRNA degradation factors
CW740_02485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
RNase_II_C_S1
Rrp44_S1
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AUD78164
UniProt:
A0A2K9AGT0
LinkDB
All DBs
Position
500158..502575
Genome browser
AA seq
805 aa
AA seq
DB search
MSKRKNQDPQAELEAQRYQNPIASRQFILRQLEEAGEPVSLDQLAKRLEMKEPEQVEALQ
KRLNAMERDGQLICNRKGRYCLVDATDLVRGKVLAHRDGYGYLALEKGGDDWYLSPREMQ
TVFHGDKVLARVRNVDRRGRTEGAIVEILDGSTSHIVGRLNEENGMKFVTSEDPRILHDL
IIAPDDCMNAEIGQVVVAQIVQRPKRNQHARGIITEVLGDYLSAGMEIEIAIRNHQIPYE
WPDDVLSEVGELPVEVTEKDWQGRVDLRQLPLVTIDGEDARDFDDAVYCRRKAKGGWTLW
VAIADVSHYVRPGSALDQEALERGNSVYFPEFVVPMLPELLSNGLCSLKPKVDRLCMVAE
MSLTATGQVTASKFYPAVMHSHARFTYDKVWGILSGDEALQKEYAPLVGDLKELHELFKA
RLKLKEARGAIEFETTETQIIFDENKKIEKIVGRVRNDAHKIIEECMICANVAAAEFIEK
HEKPGVYRVHEGPSEERLEKFRAFLGELGIFLFGGSTPEPRHYRELHDAIAERPDQELIQ
TMMLRSMMQAVYSPDNQGHFGLAFDSYTHFTSPIRRYPDLLVHRIIKAILAREFEMAGTD
GGIEYEEKELVAFTEHSSMTERRADLATRDVVDWLKCEYMLTRVGEEYWGTISSVTSFGI
FVALDELFVEGLIHISELGDDYYHFDALKMRLIGEHKRQSYRVGDRVKIKVANVDMEQRN
IDFALIEREYVKREEPKGQERKKLYAKAKKSGSLSGDGKKGKDGKKRRDYRKGAAKGSKP
ASGSAKKGAKNTKPKRGKNGKKKSK
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagaaagaatcaggaccctcaagctgagctagaagcccagcgttatcaaaac
cctatcgcaagccgtcagtttattctgcgtcagttagaagaggccggtgagcctgtatcg
ctggatcagttggccaagcgattggagatgaaggaacctgagcaggtcgaagcgttgcag
aaacgcttaaacgctatggagcgtgatggccagttaatatgtaatcgaaaaggtcgttat
tgtctggttgatgctaccgatctggtgcggggcaaagtcctggcgcacagagatggctac
ggctatctcgcgctggaaaaaggtggtgatgactggtatttgtcgccacgagagatgcag
accgtatttcatggtgataaggttcttgcgcgagtccgtaatgtggatcgtcgtggccgc
actgaaggcgccattgttgaaatactcgatggctcaaccagccacatcgttggccgtctt
aacgaagaaaatggaatgaagtttgtaacttcagaagacccacgaattttacatgattta
atcattgcacctgacgactgcatgaatgccgaaatcggtcaggtggttgttgcacaaatt
gttcaaagaccaaaacgtaatcagcacgcacgcggtatcatcaccgaagtcttaggtgac
tatttatcagcaggaatggaaatcgagattgccattcgcaatcatcagattccttatgaa
tggccggatgatgtgttatcggaagtgggtgagttacccgttgaggttaccgaaaaagac
tggcaggggcgtgtcgatttacgccagttaccactggtcaccattgatggtgaagatgct
cgtgattttgatgatgcggtgtattgtcgtcgtaaagcgaaaggcggctggactttatgg
gtagcgattgccgatgtcagtcactatgtccgaccaggctccgcgttagatcaggaagcg
ctagagcgcggtaattcagtttacttcccagaattcgttgtacctatgttgcctgagctg
ttatctaacggcttatgttcattgaagcctaaagttgatcgtctgtgtatggtggccgag
atgtcattaacggcaacggggcaagtaactgcatcaaagttctatccagccgtaatgcat
tctcatgcccgttttacttatgacaaggtatggggcattttaagtggcgacgaagcatta
caaaaagaatatgcgccactggttggcgacctgaaagaactgcacgaattatttaaagca
aggctaaagttaaaagaagcgcgcggagccattgagtttgagaccacagaaacgcaaatc
atttttgacgaaaataaaaagattgaaaaaattgttggccgagtcagaaatgatgcccac
aagattatcgaagagtgcatgatttgtgccaatgttgcagctgctgagttcattgagaaa
catgaaaagccgggcgtgtatcgtgttcacgagggaccttccgaggagcggctggaaaaa
ttcagagcgtttctgggtgagttaggcattttcctgtttggtggttcaacacctgagcct
cgtcattatcgcgaattgcatgatgccattgcagaaagacctgatcaggaactgatacag
acaatgatgcttcgctcaatgatgcaggcagtgtacagtcctgacaatcaagggcacttc
ggtctagcgtttgactcctatactcacttcacttcaccaatccgtcgttatcctgactta
ttagttcatcgcatcatcaaagcgatactggcacgtgagtttgaaatggccggtacagat
ggtggcattgagtatgaagaaaaagaactggtagcttttactgagcacagctccatgact
gaacgtcgtgccgatttggcaacacgcgatgtggttgattggcttaagtgtgaatacatg
ttgacccgtgtaggagaggaatattggggaaccatttccagtgtgacaagcttcggtatt
tttgtggcacttgatgaattgttcgtcgaaggtcttatccatatcagtgaactgggtgat
gattattatcattttgacgccttgaaaatgcgcttgattggagagcataaacgacagtct
taccgagtgggtgatcgtgtcaaaattaaggtcgccaacgtcgatatggaacagcgaaat
attgattttgcattaatcgagcgtgagtacgttaagcgcgaagaacccaaaggacaagag
cgtaaaaaactctatgccaaagctaaaaaatcaggttcgctcagtggtgatggcaagaaa
gggaaagatggtaagaagcgtcgtgattaccgtaaaggtgctgcgaaaggcagtaaacca
gcctctggcagtgccaagaaaggtgcgaaaaataccaagccaaaacgcggcaagaatggt
aagaaaaaaagtaagtag
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