KEGG   Klebsiella variicola 342: KPK_0644
Entry
KPK_0644          CDS       T00772                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
kpe  Klebsiella variicola 342
Pathway
kpe02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:kpe00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    KPK_0644 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kpe03021]
    KPK_0644 (rpoD)
Transcription machinery [BR:kpe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     KPK_0644 (rpoD)
SSDB
Motif
Pfam: Sigma70_ner Sigma70_r1_1 Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 HTH_SUN2
Other DBs
NCBI-ProteinID: ACI07699
UniProt: B5XU19
LinkDB
Position
complement(656538..658379)
AA seq 613 aa
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTATH
VGSELSQEEMDDDEDEDEDDDADDNSDDDNSIDPELAREKFAELRTQYELTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRSMMDRVRTQERIIMKLCVEQCKMPKK
NFITLFTGNETSETWFNAAVAMNKPWSEKLLEVKEDVQRGLQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq 1842 nt   +upstreamnt  +downstreamnt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcaccg
gatgccgatgatctgatgcttgccgaaaacaccgcggatgaagatgctgccgaagctgcc
gcgcaggtgctctccagcgtggaatccgaaatcggacgcacgaccgacccggtgcgcatg
tacatgcgtgaaatgggtaccgtagagctgctgacccgtgaaggcgaaatcgacatcgcc
aaacgcatcgaagatgggatcaaccaggtccagtgctccgttgccgaatacccggaagcg
atcacctacctgcttgagcagtacgaccgcgtcgaagcggaagaagcccgtctgtccgat
ctgatcaccggtttcgtcgatccgaacgccgaagaagacatggcgccgaccgccacgcac
gttggctccgagctgtctcaggaagagatggatgacgacgaagacgaagatgaagatgac
gacgccgacgacaacagcgatgacgacaacagcatcgacccagagctggcccgtgagaag
ttcgccgagctgcgtacccagtacgagctgacgcgcgacaccatcaaagccaaaggtcgt
agccatgccgccgcccaggaagagatcctgaagctgtctgaagtcttcaagcagttccgc
ctggtgccgaagcagttcgattacctggtcaacagcatgcgcagcatgatggatcgcgtt
cgtactcaggaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaa
aacttcatcacgctgttcaccggcaacgaaaccagcgaaacctggttcaacgctgcggtg
gcaatgaacaagccgtggtccgagaagttgctggaagtgaaagaagacgtgcagcgcggc
ctgcagaagctgcagcagatcgaagaagagaccggcctgaccatcgaacaggtgaaagac
atcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatggta
gaagcgaacttgcgtctggttatctctatcgccaagaaatacaccaaccgtggtctgcag
ttcctcgatctgattcaggaaggcaacatcggtctgatgaaagcggttgataagttcgaa
taccgtcgcggctacaagttctcgacctacgcgacctggtggatccgtcaggcgatcacc
cgctccatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatt
aacaagctcaaccgtatctcccgtcagatgctgcaggagatgggccgtgaaccgaccccg
gaagagctggctgagcgtatgctgatgccggaagacaaaatccgtaaggtgctgaagatc
gccaaagagcctatctccatggaaacgccgatcggcgacgatgaagattcgcatctgggg
gatttcatcgaggataccaccctcgagctgccgctggattccgcgaccaccgagagcctg
cgtgcggcaacgcacgacgtgctggccggccttaccgctcgtgaagcgaaagtcctgcgt
atgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacagttc
gacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgccac
ccgagccgttctgaagtgctgcgtagcttcctcgacgattaa

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