Klebsiella variicola 342: KPK_0644
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Entry
KPK_0644 CDS
T00772
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kpe
Klebsiella variicola 342
Pathway
kpe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kpe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KPK_0644 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpe03021
]
KPK_0644 (rpoD)
Transcription machinery [BR:
kpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KPK_0644 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
ACI07699
UniProt:
B5XU19
LinkDB
All DBs
Position
complement(656538..658379)
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTATH
VGSELSQEEMDDDEDEDEDDDADDNSDDDNSIDPELAREKFAELRTQYELTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRSMMDRVRTQERIIMKLCVEQCKMPKK
NFITLFTGNETSETWFNAAVAMNKPWSEKLLEVKEDVQRGLQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcaccg
gatgccgatgatctgatgcttgccgaaaacaccgcggatgaagatgctgccgaagctgcc
gcgcaggtgctctccagcgtggaatccgaaatcggacgcacgaccgacccggtgcgcatg
tacatgcgtgaaatgggtaccgtagagctgctgacccgtgaaggcgaaatcgacatcgcc
aaacgcatcgaagatgggatcaaccaggtccagtgctccgttgccgaatacccggaagcg
atcacctacctgcttgagcagtacgaccgcgtcgaagcggaagaagcccgtctgtccgat
ctgatcaccggtttcgtcgatccgaacgccgaagaagacatggcgccgaccgccacgcac
gttggctccgagctgtctcaggaagagatggatgacgacgaagacgaagatgaagatgac
gacgccgacgacaacagcgatgacgacaacagcatcgacccagagctggcccgtgagaag
ttcgccgagctgcgtacccagtacgagctgacgcgcgacaccatcaaagccaaaggtcgt
agccatgccgccgcccaggaagagatcctgaagctgtctgaagtcttcaagcagttccgc
ctggtgccgaagcagttcgattacctggtcaacagcatgcgcagcatgatggatcgcgtt
cgtactcaggaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaa
aacttcatcacgctgttcaccggcaacgaaaccagcgaaacctggttcaacgctgcggtg
gcaatgaacaagccgtggtccgagaagttgctggaagtgaaagaagacgtgcagcgcggc
ctgcagaagctgcagcagatcgaagaagagaccggcctgaccatcgaacaggtgaaagac
atcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatggta
gaagcgaacttgcgtctggttatctctatcgccaagaaatacaccaaccgtggtctgcag
ttcctcgatctgattcaggaaggcaacatcggtctgatgaaagcggttgataagttcgaa
taccgtcgcggctacaagttctcgacctacgcgacctggtggatccgtcaggcgatcacc
cgctccatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatt
aacaagctcaaccgtatctcccgtcagatgctgcaggagatgggccgtgaaccgaccccg
gaagagctggctgagcgtatgctgatgccggaagacaaaatccgtaaggtgctgaagatc
gccaaagagcctatctccatggaaacgccgatcggcgacgatgaagattcgcatctgggg
gatttcatcgaggataccaccctcgagctgccgctggattccgcgaccaccgagagcctg
cgtgcggcaacgcacgacgtgctggccggccttaccgctcgtgaagcgaaagtcctgcgt
atgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacagttc
gacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgccac
ccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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