Klebsiella variicola 342: KPK_3473
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Entry
KPK_3473 CDS
T00772
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpe
Klebsiella variicola 342
Pathway
kpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPK_3473 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpe03019
]
KPK_3473 (rne)
03009 Ribosome biogenesis [BR:
kpe03009
]
KPK_3473 (rne)
Enzymes [BR:
kpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KPK_3473 (rne)
Messenger RNA biogenesis [BR:
kpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPK_3473 (rne)
Ribosome biogenesis [BR:
kpe03009
]
Prokaryotic type
rRNA processing factors
KPK_3473 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ACI08320
UniProt:
B5XXI5
LinkDB
All DBs
Position
3491493..3494720
Genome browser
AA seq
1075 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPA
PMLEEPVAAPAVAAAPVAAAAPAQPGLLSRFFSALKNIFSGTEEAKPVEVPVEKKAEEKP
ERQQERRKPRSNNRRDRNDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRR
NRREKQPQNVEARDARQTVGDDADKAKSRDEQQPRRERSRRRNDDKRQAQQEAKVQTREE
PEVQETEQEERVQTLPRRKPRQLSQKVRIESAVAEQTAEIAPETVVAEVAAPRSEPLKAE
LPAVVENVVEHDENGEPREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA
CASPEMASGKVWIRYPVVRPQDQQPEEVPVQDTSAIEAIEAVATPVAVVETVTAAPVTVE
PATMEPVTAEPVVVEPVVAAEPVIVDTPEIVEPAAVEPAPAVEAPQAIAPVTIDAEPVTV
EPEVVETAPVVEAPVETIVPATETVVEAPVTEAAPTAPAEPVKAETPVSKPVVVAGDRHA
TAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGHSATRKAAAEPTRPQPVE
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacctagccttgaagccgcgtttgtcgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgct
aactacaatgcgcacggtcgtcctaatatcaaagacgtgctgcgtgaaggtcaggaagtt
atcgtgcagattgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatc
agcctggcaggcagctatctggtcctgatgccgaacaacccgcgcgcggggggaatttcc
cgccgtatcgagggcgacgaccgcactgaactgaaagaagcgctggcgagcctggagctt
ccggacggcatgggtcttatcgttcgcaccgctggcgtcggcaaatctgccgaagccctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttcctgatccaccaggaaagcaacgtgattgtccgcgcattccgcgat
tatctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgctcgagctggcg
cgccagcatatcgccgcactgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgaatcgcaaattgagtccgccttccag
cgtgaagtgcgcctgccttccggcgggtctatcgttatcgacagcaccgaagcgctgacc
gcgatcgatatcaactccgcccgcgccactcgcggcggcgatatcgaagagacagccttc
aataccaaccttgaagcggctgacgagattgcccgccagctgcgtctgcgcgacctcggc
ggcttgatcgttatcgacttcatcgatatgaccccggttcgccaccagcgtgcggtggaa
aaccgtctgcgtgaagccgttcgtcaggaccgcgcgcgcattcagatcagccatatttcg
cgtttcggcctgctggagatgtctcgccagcgcctgagcccgtcgctgggcgaatccagc
catcacgtctgcccgcgctgctccggcaccggtaccgtgcgtgataacgagtcgctgtcg
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtccac
gccatcgttccggtaccgatcgcctcttatctgctgaacgaaaaacgtgccgcagtgagc
gcaatcgaatcccgtcagggcgatgtccgcgtcattatcgtgccgaacgacgagatgcag
acgccgcactactccgtcctgcgcgtgcgtaaaggtgaagagacctcaacgctgagctat
ctgctgccgaagctgcatgaagaagagatggcgctgcctggtgacgaggagccagcagaa
cgtaaacgtccggagcagcctgcgctggccgcctttgtgatgcctgacgccccaccggca
ccgatgctggaagagcctgtggctgcccctgcggtcgccgctgccccggtcgcggccgcc
gcgccggcccagccgggactactctcacgcttcttcagcgcgctgaaaaatatcttctct
ggcactgaagaagccaagccggttgaagttccggtcgagaagaaagcggaagaaaaaccg
gagcgtcagcaggagcgccgtaaaccgcggagcaacaaccgccgcgatcgcaacgaccgc
aacgatcgccgtgataaccgcgacaatcgtgacaaccgcgataaccgtgacaatcgcgac
acccgtgcggacaatgccgagggtcgtgagccgcgcgaatcgcgtgaagaaaaccgtcgc
aatcgtcgcgaaaagcagccgcaaaacgtagaagcgcgtgacgctcgccagaccgtcggc
gatgacgcggacaaagccaaatcccgcgacgagcagcagccgcgccgcgaacgctcccgc
cgccgcaatgacgataaacgtcaggcgcagcaggaagccaaggtgcagacgcgtgaagag
ccggaagtacaggagactgagcaggaagagcgtgtgcagactctgccgcgtcgtaaaccg
cgtcagctctcccagaaagtacgcattgagtcagccgttgccgagcagactgccgagatc
gcgcctgagaccgttgtggctgaagtcgccgccccgcgcagcgagccgctgaaagccgaa
ctgccggcggtagtggaaaacgtagtggaacacgatgaaaacggcgaaccccgtgaagcg
aacggtatgccgcgccgctctcgtcgttccccgcgtcatctgcgcgtgagcggtcagcgt
cgtcgtcgctatcgtgacgaacgctatccgacccagtcgcctatgccgctgaccgtcgcc
tgcgcctcgccggagatggcttccggtaaagtctggatccgctacccggtcgttcgtccg
caggaccagcagccggaagaggttccggttcaggacaccagcgccattgaagccattgag
gctgttgcgacaccggttgccgtggttgaaaccgtcactgccgcgccagttaccgtcgag
ccggcgaccatggagcccgttaccgctgagccggtggtcgtcgaacctgtcgtagccgcc
gagccggtgatcgttgatactccggaaattgtcgagccagccgctgtcgagccagcgcca
gctgtcgaagcgcctcaggctattgcgccagtgacgatcgacgccgagccggtcacggtt
gaacctgaagtggtggaaacggcgcctgtcgttgaagcgccagtggaaaccatcgttccg
gccacggaaaccgtggtggaagcaccggtgaccgaagccgccccaacagcccctgccgaa
ccggtcaaagctgaaacgccggtaagcaaacccgtggttgtggctggcgatcgccatgct
accgcgccgatgacccgggcgcctgctccggactatgtcccggaagcgccgcgccacagc
acctgggtgcgcccgccgttcgcttttgaaggtaaaggcgccgccggtggtcatagtgcg
acgcgtaaagccgccgcagaaccgacccgcccacagcccgtcgaataa
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