Kosmotoga pacifica: IX53_00505
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Entry
IX53_00505 CDS
T03949
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
kpf
Kosmotoga pacifica
Brite
KEGG Orthology (KO) [BR:
kpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kpf03016
]
IX53_00505
Enzymes [BR:
kpf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
IX53_00505
Transfer RNA biogenesis [BR:
kpf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
IX53_00505
Prokaryotic type
IX53_00505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
PUA
TruB_C_2
TruB-C_2
UPF0113
IF2_N
DKCLD
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
AKI96550
UniProt:
A0A0G2Z4L1
LinkDB
All DBs
Position
109732..110658
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AA seq
308 aa
AA seq
DB search
MTSGFLFVDKPVGITSHDVVDMARKKLGIRKVGHSGTLDPFASGLLILGVGRATRLLEYL
KDFEKTYVVKMKLGVITDTFDLTGKIVEEHPDWNLSTEEIVNALKAFEGEYLQVPPAYSA
KRYKGKRLYQLAREGKIINLPPKRVKIFSIDDIEVRFPEGEVSFCARVSSGTYIRSLVMD
VGYRLGCGATTTYLRRTKVGAFSVSEAVRPEELSLVNLKDSEAVMGFLPSIIVSEEQGKA
VLNGRQIWIQGIAGLDGSFNKNDLIRIVSEEGRLLSIAKAERSSRFIKMLLRKKENQRVA
KLLKVFGD
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgacctctgggtttcttttcgttgataaacctgtcgggatcacttcccatgatgttgtc
gatatggcaagaaaaaagctgggaatcaggaaagtaggccattcaggaacattagatcct
tttgccagtggtctgctgatactgggtgttgggcgtgcaacgagacttctcgagtatctc
aaggatttcgaaaagacatacgtggtcaaaatgaaactcggtgtgattaccgatactttt
gatctcacgggtaagattgtggaggagcatcccgactggaatctttctactgaagagatt
gtcaacgcgcttaaagcctttgaaggcgaatatcttcaggttccacctgcttattctgca
aaacggtacaaagggaagcgcctttaccagctagccagggagggaaagattataaacctt
ccgccaaagcgtgtgaaaatcttctcaattgatgacatcgaagtgcgatttccagaaggt
gaagtttcgttctgtgcaagagtatcgtcaggaacatatataaggtcgctggttatggat
gtgggatatcgtctcggttgtggtgccactacgacttacctgagacgaacgaaagttggt
gctttctccgtttctgaagctgtcaggcccgaagaattatctcttgtgaacttgaaggat
tcagaggcagtaatgggcttccttccttctattatcgtgagtgaagagcagggaaaggcc
gtcctcaacgggagacaaatctggattcaaggcatcgccggtctggatggcagcttcaat
aagaacgaccttataagaatcgttagcgaagaaggcaggctcctatctatcgctaaggcc
gaaaggtcttcaagattcatcaaaatgcttctgagaaaaaaagaaaatcagagggttgca
aaacttctaaaggtatttggggattag
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