Kosmotoga pacifica: IX53_02995
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Entry
IX53_02995 CDS
T03949
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
kpf
Kosmotoga pacifica
Pathway
kpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX53_02995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpf03019
]
IX53_02995
Messenger RNA biogenesis [BR:
kpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IX53_02995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
YfbR-like
HHA
FtsA
Motif
Other DBs
NCBI-ProteinID:
AKI96957
UniProt:
A0A0G2Z5Z2
LinkDB
All DBs
Position
complement(624493..626019)
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AA seq
508 aa
AA seq
DB search
MIIGIFIGLIIGTAITFIAIPIVTKRVKNRLEEQLKAARQDAESIKKRALEEAEHLRKKA
LIEGREELHKFREEMERELRKEREELKQWDERLSRKEDNLDRKEEVLEKMKFELESKREE
IKNLKEAAEKKLYELSELTPEEARELVIKRAEEIYEYEIAQRFKQIKDQYEEEAMKHAKW
VIVNAVQRYAADVTGDITVSTVSLPSDEMKGRIIGREGRNIRAFEKLTGADLIIDDTPEI
VVVSCFNPLRRAVAKLTLERLVEDGRIHPARIEEMYEKAKKAVYLEVKEAGQEALMKVGI
PSMHPELVKLLGRLKYRTSYGQNVLEHSIEVAQIATLMAAELGLNVDKVKRGALLHDLGK
AVDHELEGSHAIIGGEIAKRYGEKADIVNMIQYHHGETEATSPESVLIAAADAISAARPG
ARRESLDMYIKRLEKLEEIATSFSHVEKAYAIQAGRELRVIVEPDKVDDLLAEKLAADIA
RKIEEEMEYPGVVKVTVIRERRSVAYAS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgataattgggatttttatcggattaataataggaacagcgataacattcatcgcaatc
cccatagtcaccaaaagggttaaaaacaggcttgaagaacagcttaaagctgccaggcag
gatgctgaatcgataaagaaaagggctcttgaagaggctgaacatttgaggaaaaaggct
ctcatagaaggtcgcgaagagcttcataaattcagagaagaaatggaaagagagcttcga
aaagaaagagaggaactcaagcagtgggatgagaggttgtccagaaaggaagataacctc
gatagaaaggaagaagttcttgaaaaaatgaaattcgagctcgaatcgaaacgtgaagaa
ataaaaaacctcaaagaagccgctgagaagaagttatatgaactttctgaacttacacct
gaagaagcgcgagaactcgtgatcaaaagagcggaggagatttacgaatatgagatcgcc
caacggttcaagcagataaaagaccagtacgaagaagaagctatgaaacatgcaaaatgg
gtaatagtgaacgctgttcaacgttatgctgcggatgttacaggagatattacagtgagc
acggtaagcctgccttccgatgaaatgaagggacggataattggaagggaaggaaggaat
attagagcttttgagaagctcacaggcgctgatttaatcatcgatgacacaccagaaata
gttgtggtttcctgttttaatcctctccgtagagcggtcgcaaagttgactcttgaaaga
cttgtggaagatggaagaattcatccagccaggatagaagagatgtacgaaaaagccaaa
aaggctgtctatttagaagtaaaggaagcgggtcaggaggcactgatgaaggtcggaata
ccatcaatgcaccctgaactggtaaaactgctcggtcgtcttaaatacagaacaagttat
ggacagaatgtccttgaacactcgatagaagttgcgcaaatagcgacgcttatggcggca
gagctagggctcaatgttgacaaagttaaaagaggggctctccttcacgacctaggaaaa
gccgttgaccacgaacttgaaggttctcacgcaataataggaggagaaatcgccaagcgt
tatggtgaaaaggcagatatagtaaatatgattcaataccatcacggagaaaccgaagcc
acttcacctgaaagtgtgcttatagctgccgctgatgctatttctgctgcacgtcctggc
gcaaggcgcgaatccctcgatatgtatataaaacgactggaaaaacttgaggaaatcgca
acgagtttttctcatgtagaaaaagcttacgcaattcaagcaggaagggaactgagggta
attgtggaacctgataaagtagatgatctcctggctgaaaaacttgctgcagacatcgcg
aggaaaattgaagaagaaatggaatatcccggtgtggttaaagtgacagtaatcagagaa
agaaggagcgtagcatatgccagttaa
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