Kosmotoga pacifica: IX53_06180
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Entry
IX53_06180 CDS
T03949
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kpf
Kosmotoga pacifica
Pathway
kpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX53_06180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpf03019
]
IX53_06180
03009 Ribosome biogenesis [BR:
kpf03009
]
IX53_06180
Enzymes [BR:
kpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IX53_06180
Messenger RNA biogenesis [BR:
kpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IX53_06180
Ribosome biogenesis [BR:
kpf03009
]
Prokaryotic type
rRNA helicases
IX53_06180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
AAA_22
AAA_19
Cas3-like_C_2
Hyccin
Motif
Other DBs
NCBI-ProteinID:
AKI97475
UniProt:
A0A0G2Z7B0
LinkDB
All DBs
Position
complement(1329301..1330857)
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AA seq
518 aa
AA seq
DB search
MNKKFNEMGLSRKMLTAIEKMGFSEPTPIQSSAIPAILEGKDMIGQAHTGTGKTATFGIP
MLELLDYSSRNVQALVLCPTRELAVQVTREISTLGANREKLSAVTVYGGQPIERQIRALK
KGVQIVVGTPGRLMDHMRRGTLKLDNVKYVVLDEADEMLNMGFLEDIEYILSQINADRQT
VMFSATMPRPIVTLARKFQKEPELIRVVERVLTVPTIEQYYLEVKEVNKANVLSRLLEYY
NLELSLVFCNTKKKVDELVVQLQGMGYSADGLHGDMNQSLRDRVMRSFRNGSIKILVATD
VAARGIDVDNIEAVFNYDIPEDEEYYVHRIGRTGRAGKTGMAFSFAYGRSLYRLREIQRY
TKIKVNPLNIPTLKDIKARKAEAFLDEINKILEQGNLGDYIPAVESLITRGYTSMEIAAA
LIKMHVSQNNLQEEPETSRDRKMVKLFINAGKKHNVRARDLLGAITGETGIPGDRIGAIK
LLDKHSYVEVDYKYAELVIESLNRCRIKGNRVSVQRVN
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaaatttaacgaaatgggtttatcccgaaagatgttaactgctattgagaaa
atgggcttttctgaaccaactcccatccagtctagtgcgatacctgcaattctcgaagga
aaggacatgatcggtcaggcacataccggaacaggaaaaacggccacttttggtattcca
atgctcgaacttctggattactcttcaagaaatgtacaggcccttgttctttgccctacg
agagaactcgctgttcaggtgacaagagaaataagcaccctgggagcgaatcgtgagaaa
ttgagcgctgtgacggtatacggtggtcaacctatagaacgacaaatacgagctctaaaa
aaaggtgtgcagatagttgttggtacgcccggaaggctgatggaccacatgcgcaggggt
acacttaaactggacaacgtgaaatacgttgtgctcgatgaagctgatgaaatgctgaat
atgggatttcttgaggacattgaatacatactgagccagataaatgccgatagacagaca
gtgatgttctcagcaacaatgccaagaccgatagtcaccctagcaagaaaattccagaaa
gaacctgaactcataagggttgtggagagagtgttgactgttcctacaattgaacaatat
tatctcgaagtaaaagaggttaacaaagccaatgtgctctcaaggcttctggagtattat
aacctggaactttctcttgtattctgtaacacaaagaaaaaagtagatgagctcgtagtg
cagcttcagggaatgggttattctgcagacgggttgcatggagacatgaatcagtcattg
agggacagggtcatgaggagctttcggaacggttctatcaaaatcctcgttgctaccgat
gtagctgcacgcgggattgatgtggataatattgaagcggtattcaattatgatattccc
gaggatgaggagtattacgttcacagaatcggcagaacaggacgggctggaaagaccggt
atggcttttagttttgcatatgggcgttcattgtacaggctcagagaaatccagcgttat
acaaaaatcaaggttaaccctctgaatatccctacactgaaagacatcaaagccaggaaa
gcggaagctttccttgatgaaatcaataaaattcttgaacagggaaaccttggagattat
attcccgctgtcgagtcactcatcacccgtgggtatacttccatggaaatagccgcagca
ttgataaaaatgcacgtttctcaaaacaaccttcaggaagaacctgaaacctccagggat
cgaaagatggtgaagctcttcataaatgccgggaaaaagcacaacgtccgagcacgagac
cttctgggagcaattacaggagaaacaggtatcccgggagataggataggagccattaaa
cttctggacaaacacagttacgtagaagttgactataaatacgcggaactcgtgattgaa
tcccttaaccgctgcaggataaaaggtaacagagtctccgttcagagagtcaattga
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