Kosmotoga pacifica: IX53_08890
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Entry
IX53_08890 CDS
T03949
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kpf
Kosmotoga pacifica
Pathway
kpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX53_08890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpf03021
]
IX53_08890
03019 Messenger RNA biogenesis [BR:
kpf03019
]
IX53_08890
Transcription machinery [BR:
kpf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IX53_08890
Messenger RNA biogenesis [BR:
kpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IX53_08890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
Spore_III_AA
Mor
OB_RNR_1st
AAA_24
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AKI98348
UniProt:
A0A0G2ZHU0
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All DBs
Position
1883847..1885085
Genome browser
AA seq
412 aa
AA seq
DB search
MPIREIYKLARKYEITGYTQMAKKELIFAILKAQTESYGYFFDHGILEVTENGYGFLRTL
DNNLLPSPNDIYVSQSQIRRFNLTTGDWVAGQIRKPKEGEKYFALLRIEAINQKPVNFAA
ERISFQNLTPVYPNERFILETEKETISTRIIDLFSPIGKGQRGLIVAPPKAGKTTLLKEI
ANGIARNHPETIRIILLIDERPEEVTDLRRSTDAYVIAAPFDMHPEKQIRVAELTLEMTK
RMVEFGYDVVILLDSITRLARAYNLCVPPSGKLLSGGVDPAALYKPKHFFGAARNIEEGG
SLTIISTALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLNLSGTRKEELL
LPPEILKKVWILRRMVSSLGEEEGLTTIVDKLRSTADNEEFLDLIDMHKNRY
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgccaatccgggaaatctacaaactggcccgtaaatacgaaatcacgggttacactcag
atggccaaaaaggaacttatctttgcgattctcaaagcgcaaacggagtcttatggctat
ttttttgaccacggaatactcgaagtgaccgaaaacggttacggtttcctcagaacactt
gacaacaatcttctacccagcccgaacgatatctatgttagtcaatcgcagatcagaagg
tttaacctcacgacgggtgactgggtggcaggtcagatccgaaaaccgaaagagggagaa
aagtacttcgctttgctcagaatcgaggcgataaatcaaaaacccgtgaatttcgctgca
gaacgaattagctttcaaaacctcacaccagtctaccccaacgagaggttcatcctcgaa
acggagaaagaaacgataagtacaaggatcattgatctcttttccccgatcgggaaaggt
cagagaggactcatcgttgctccgcctaaggccgggaaaacgaccctcttgaaggaaata
gctaacggtattgccagaaatcacccggaaactattagaataattcttctcatcgatgaa
agacctgaagaagttacggatttgaggagatcgacagacgcttatgtgatcgcggcgcct
ttcgatatgcaccctgagaagcagataagagtggcagaactcacacttgaaatgacgaaa
aggatggtggagttcggatatgatgttgtaatcttgctagacagtatcacacgcctggca
agagcttataacctgtgtgtgcccccaagcggaaaactccttagcggtggtgtggatcct
gcagctctctacaaaccaaaacatttctttggagctgcaaggaatattgaagaaggaggc
agccttactatcatctcaacagctttagtggagaccggaagcaaaatggatgaagttata
ttcgaagagttcaagggaacaggaaacatggaactggtactttcaaggcaacttgctaac
aagcgtatattccctgctatcaacctgaacctctccggtacgaggaaagaagaactcctt
ctgcctcctgagattctgaaaaaggtctggatactaagacgcatggtatcctcccttgga
gaagaagaaggtctgacaacaatagttgataaactgcgctctacagcggataatgaggaa
ttcttagatttaatagacatgcataaaaacaggtattga
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