Kosmotoga pacifica: IX53_10125
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Entry
IX53_10125 CDS
T03949
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kpf
Kosmotoga pacifica
Pathway
kpf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kpf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IX53_10125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpf03021
]
IX53_10125
Transcription machinery [BR:
kpf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IX53_10125
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
AKI98124
UniProt:
A0A0G2ZEZ9
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All DBs
Position
2119182..2120384
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AA seq
400 aa
AA seq
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MAGEKTRKGASKQSKTKNENGTLLTNEGIQKRIKELLKKGKKRGFITYEDIDNAFPPDYE
GFDSSLVEVIYEEFEKNKIRILEKSPDEEEESEEVVETEELSSLLEQEEPEMYDNISLKD
PIKMYLKEIGKIPLLTPSRERELARRAQKGDPKAREELITANLRLVVSIAKRYIGRGLSF
LDLIQEGNIGLIKAVEKFDWKKGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVETIN
KVNKVIREHLQEHGEYPSVEELGKLTGKPPEKIEEILAASKETVSLESPISGDEESTMGD
FVHDESIEKPQEAAMKMLLREHIDQVLDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFN
VTRERIRQIEVKALRKLRHPSRSKQLKALVGMLTSSKSEK
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgaaaagaccagaaagggtgcttccaaacaatcgaaaaccaagaacgaaaac
ggaacattactcaccaatgagggaattcagaaacggattaaggaactattgaaaaagggt
aagaaacgaggtttcattacctatgaggatatagacaatgccttcccacctgactacgag
ggttttgattcttctcttgttgaagttatctacgaagaatttgagaagaacaagatcaga
attcttgaaaagtctcccgatgaagaggaggaatctgaagaagtggtggagaccgaagaa
ctctcctcgctgttagaacaggaagaacctgaaatgtacgacaacatatcattgaaagat
ccgataaaaatgtatctcaaagagatcgggaagatccctcttcttaccccgagcagagaa
cgtgaactcgcgcgaagagcacagaagggcgatccaaaagcgagggaagagttgataact
gccaacctcagactggtagtttctatagcgaagagatatattggaaggggtctatctttc
ctcgacttgatccaggagggcaatatcggcttgataaaagcggttgaaaaatttgattgg
aaaaaaggctataaattcagtacttacgccacgtggtggatcagacaggcaataactaga
gccattgccgatcaggcgaggactataagagtaccagtgcatatggtagaaactataaac
aaggttaacaaagtaatcagagagcatttgcaggagcacggtgaatatcccagcgtcgaa
gaactgggaaaattaactggtaaaccacctgaaaagatagaagaaatccttgcggcgtct
aaggaaacagtttcactggagtctcctatcagtggtgatgaagaatcgaccatgggagat
tttgtccacgatgagtccattgaaaaaccacaggaagctgcaatgaaaatgcttctgagg
gagcacatagaccaggttttagacacactaagcccccgagaggcgatggttttaaagatg
aggtacggtcttctggatggtaaaactaaaaccttggaggaagttggacaattctttaat
gttacaagggagcgaataagacagattgaagttaaagctttacgaaaacttagacaccct
tcaagaagcaaacagctcaaagcccttgttggaatgctgactagctcaaaatccgagaaa
tag
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