Kibdelosporangium phytohabitans: AOZ06_05885
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Entry
AOZ06_05885 CDS
T04088
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kphy
Kibdelosporangium phytohabitans
Pathway
kphy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOZ06_05885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kphy03400
]
AOZ06_05885
Enzymes [BR:
kphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOZ06_05885
DNA repair and recombination proteins [BR:
kphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOZ06_05885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ALG06519
UniProt:
A0A0N7F2Q9
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All DBs
Position
1306967..1310524
Genome browser
AA seq
1185 aa
AA seq
DB search
MSHAPLTGLLAGLSADPAVTAVAEAAGAPVYELEGPPAVRPVVAATLAAHSMVLAVTATG
READDLTAALRDLLGKDAVAEFPSWETLPHERLSPRADTVAQRLSVLHKLAHPDGQPVKV
IVSTVRSLIQPMAPGLGDLAPVYLKTGDEHDFDQLIEQLVVLAYSRVDMVEKRGEFAVRG
GILDLFPPTAEHPFRVEFWGDEVSEIRPFSVADQRSLPTKVTEVTAPPCRELLLTESVKL
RAADLATDHAGDAHLAEMLTKLSGGIPVEGMEALIPVLCDGELELLTDVLPEGSHVLVID
PEKIRTRAHDLVRTGQEFLEASWMAAAGGGKAPIDLGASAYRELGEIVTHARETGRNWWT
LSQLTGADDVLSLGIKPIDSYRGDIERAFADLRAHTATGGAAVLVVPGSGTAQRAVEQMG
EAEVPARFAADGLTEAPQAGVVTVVRGALEDGFTAPDSALVVLTETALTGGRHGTSTRDM
SAKMPSRRRNAVDPLALRAGDYVVHEQHGIGKYIEMVQRTVAGATREYLVLEYGSSKRGQ
PGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKQIAAELVQLYAARQ
SAPGHAFGPDTPWQRELEDAFPFTETVDQMAAIDEVKGDMQRGVPMDRVICGDVGYGKTE
IAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFAERMRSFPVNIKGLSRFTDPGESEQTL
AALADGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSA
TPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGGYDDKQVGAAIRRELLRDGQVFFVH
NRVSSIERAAKRIRELVPEARVVTAHGQMNEDRLEKIIQGFWEREHDVLVSTTIVETGLD
ISNANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQN
TELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRRHAGADGPE
GEEELAEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAARDADELTGVMEELKDRYGAPP
LPVERLFAVATFRQACRGHGVTEVITQGAMIRFAPLDLRDSQIVRLKRLHPKANYKAVTN
TVVVPRPTEGPAGGRIGAPHLRDQELLKWCTDFLESLVIAPAPVG
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcacgctccgctgactggtctgctggccggcctgtccgctgatcccgcggtcacg
gctgtcgctgaagccgctggcgcacccgtctacgaactcgaaggcccgcccgcggtgcga
cccgtggtcgccgcgacgctcgccgctcactcgatggtcctcgccgtcaccgccaccggt
cgcgaggccgacgacctgacggccgcgttgagggatctgctcggcaaggacgcggtcgcg
gagttcccctcgtgggagacgctgccgcacgaacggttgtcaccgcgcgccgacacggtc
gcccaacgcctgtccgtgctgcacaaactcgcgcacccggacggtcagcccgtcaaggtc
atcgtctcgaccgtgcgcagcctcatccagccgatggcgcccggtctcggcgatctcgcg
cccgtgtacctcaagaccggcgacgagcacgacttcgaccagctgatcgagcagctcgtc
gtgctcgcgtactcgcgggtcgacatggtcgagaaacgcggcgagttcgctgttcgcggc
ggcatcctcgacctcttcccgcccaccgccgagcacccgttccgcgtcgagttctggggc
gacgaggtcagcgagatccggccgttctccgtggccgaccagcgctcgctgccgacgaag
gtcaccgaggtgaccgcgccgccgtgccgcgagctgctgctcaccgagtcggtcaagctc
cgcgccgcggacctggcgaccgaccacgcgggcgacgcgcacctggccgagatgctgacc
aagctctccggcggcatccccgtcgagggcatggaggcgttgatccccgtgctctgcgac
ggcgagctggagctgctcaccgacgtcctgcccgagggctcgcacgtgctggtgatcgac
ccggagaagatccgcacccgtgcgcacgacctggtccgcaccggccaggagttcctcgaa
gcctcgtggatggccgccgccggtggcggcaaggcgccgatcgacctcggcgcgtcggcg
taccgcgaactgggcgaaatcgtcacgcacgcacgcgaaaccggccgcaactggtggacg
ctcagccagctcaccggcgccgacgacgtgctttcccttggcatcaaaccgatcgactcg
taccgcggcgacatcgaacgcgccttcgctgaccttcgggcgcacaccgccaccggggga
gcggcggttctcgtcgtgcccggcagcggcaccgcgcagcgtgcggtagagcagatgggc
gaggccgaggtcccggccaggttcgccgccgacgggctgaccgaggcgcctcaagcgggt
gtcgtcacggttgtccgcggtgcgctcgaagacggtttcacggcgccggactccgcgctc
gtcgtgctcaccgagacggcgctgaccggcggcaggcacggcacgtccacaagggacatg
tcggcgaagatgccgtcccggcgccgcaacgccgtcgacccgctggccctcagggccggc
gactacgtggtgcacgagcagcacggcatcggcaagtacatcgagatggtccagcgcacg
gtcgcgggcgccacgcgtgagtacctcgtgctggagtacggatcgtccaagcgcggccag
cccggcgaccgcctgttcgtgccgaccgaccagctcgacgaggtctcccgctacgtcggc
ggcgagctgccgacgctgaacaagctcggcggctcggactggaagaacacgaaagccaag
gcgcgcaaggccgtcaagcagatcgcggccgagctcgtgcagctctacgcggcccgccag
tccgcgccggggcacgcgttcgggccggacaccccgtggcagcgcgaactggaggacgcg
ttcccgttcaccgagaccgtcgaccagatggccgcgatcgacgaggtcaagggcgacatg
cagcgcggtgtcccgatggaccgcgtgatctgcggtgacgtcggctacggcaagaccgag
atcgccgtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgtcgtgctcgta
ccgaccacgctgctggcccagcagcacctgaacacgttcgccgagcggatgcggtccttc
ccggtgaacatcaagggcctgtcccggttcaccgaccccggcgagtccgagcagaccctc
gcggcgctggccgacggcgaggtcgacatcgtgatcggcacgcaccggctgctgcagacc
ggcatccgctacaaggacctcggtctggtgatcgtcgacgaggagcagcgcttcggcgtc
gagcacaaggaacacatcaaggccctgcgcacgcacgtggacgtgctcaccatgtccgcc
acgccgatcccgcgcacgctggagatgtcgctggccggaatccgcgagatgtccacgatc
ctgaccccgccggaggaccggcacccgatcctgacctacgtcggcggctacgacgacaag
caggtcggcgcggcgatccggcgtgagctgctgcgtgacggccaggtgttcttcgtgcac
aaccgcgtctcgtcgatcgaacgcgccgccaagcggatccgcgaactcgtgccggaggcc
cgcgtggtcaccgcgcacggccagatgaacgaggaccgcctggagaagatcatccagggt
ttctgggagcgcgaacacgacgtgctcgtgtccaccacgatcgtcgagacaggcctggac
atctccaacgccaacaccctgatcgtcgagcgcggcgacctgctcggcctcgcccagctg
caccagctgcgcggccgggtcggccgtggccgcgaacgcgggtacgcgtacttcctgtac
ccgccggaggcgccgctcaccgagaccgcgcacgaccggctggccacgatcgcgcagaac
accgaactcggcgcgggcatggccgtggccatgaaggacctggagatccgcggcgcgggc
aacatcctcggggcggagcagtccgggcacatcgcgggcgtcggcttcgacctctacgtc
cggctcgtcggtgaagccgtcgaagcgttccgcaggcacgcgggcgcggacgggcccgaa
ggcgaggaggagctggccgaggtccgcgtggacctgccggtcgacgcgcacatcccgcac
gactacgtgcccggcgagcggctgcggctggaggcgtaccgcaagatcgccgcggcccgc
gacgccgacgagctcaccggcgtgatggaggagctcaaggaccgctacggcgcgccgccg
ctgccggtcgagcggctcttcgcggtggcgacattccgccaggcatgccgcggccacggc
gtcaccgaggtcatcacccagggcgccatgatccggttcgccccgctcgacctgcgcgac
tcccagatcgtccggctcaagcggctgcacccgaaggccaactacaaggcggtcaccaac
accgtcgtggtgcctcgcccgaccgagggaccggccggtggccggatcggcgcgccgcac
ctgcgtgaccaggagctgctcaagtggtgcacggacttcctggagagcctggtgatcgcc
ccggccccagtcgggtga
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