KEGG   Kibdelosporangium phytohabitans: AOZ06_05885
Entry
AOZ06_05885       CDS       T04088                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
kphy  Kibdelosporangium phytohabitans
Pathway
kphy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:kphy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AOZ06_05885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kphy03400]
    AOZ06_05885
Enzymes [BR:kphy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AOZ06_05885
DNA repair and recombination proteins [BR:kphy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AOZ06_05885
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII Cas3-like_C_2 UB2H AAA_22 RecG_dom3_C Glyco_tran_WecG
Other DBs
NCBI-ProteinID: ALG06519
UniProt: A0A0N7F2Q9
LinkDB
Position
1306967..1310524
AA seq 1185 aa
MSHAPLTGLLAGLSADPAVTAVAEAAGAPVYELEGPPAVRPVVAATLAAHSMVLAVTATG
READDLTAALRDLLGKDAVAEFPSWETLPHERLSPRADTVAQRLSVLHKLAHPDGQPVKV
IVSTVRSLIQPMAPGLGDLAPVYLKTGDEHDFDQLIEQLVVLAYSRVDMVEKRGEFAVRG
GILDLFPPTAEHPFRVEFWGDEVSEIRPFSVADQRSLPTKVTEVTAPPCRELLLTESVKL
RAADLATDHAGDAHLAEMLTKLSGGIPVEGMEALIPVLCDGELELLTDVLPEGSHVLVID
PEKIRTRAHDLVRTGQEFLEASWMAAAGGGKAPIDLGASAYRELGEIVTHARETGRNWWT
LSQLTGADDVLSLGIKPIDSYRGDIERAFADLRAHTATGGAAVLVVPGSGTAQRAVEQMG
EAEVPARFAADGLTEAPQAGVVTVVRGALEDGFTAPDSALVVLTETALTGGRHGTSTRDM
SAKMPSRRRNAVDPLALRAGDYVVHEQHGIGKYIEMVQRTVAGATREYLVLEYGSSKRGQ
PGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKQIAAELVQLYAARQ
SAPGHAFGPDTPWQRELEDAFPFTETVDQMAAIDEVKGDMQRGVPMDRVICGDVGYGKTE
IAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFAERMRSFPVNIKGLSRFTDPGESEQTL
AALADGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSA
TPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGGYDDKQVGAAIRRELLRDGQVFFVH
NRVSSIERAAKRIRELVPEARVVTAHGQMNEDRLEKIIQGFWEREHDVLVSTTIVETGLD
ISNANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQN
TELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRRHAGADGPE
GEEELAEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAARDADELTGVMEELKDRYGAPP
LPVERLFAVATFRQACRGHGVTEVITQGAMIRFAPLDLRDSQIVRLKRLHPKANYKAVTN
TVVVPRPTEGPAGGRIGAPHLRDQELLKWCTDFLESLVIAPAPVG
NT seq 3558 nt   +upstreamnt  +downstreamnt
gtgtctcacgctccgctgactggtctgctggccggcctgtccgctgatcccgcggtcacg
gctgtcgctgaagccgctggcgcacccgtctacgaactcgaaggcccgcccgcggtgcga
cccgtggtcgccgcgacgctcgccgctcactcgatggtcctcgccgtcaccgccaccggt
cgcgaggccgacgacctgacggccgcgttgagggatctgctcggcaaggacgcggtcgcg
gagttcccctcgtgggagacgctgccgcacgaacggttgtcaccgcgcgccgacacggtc
gcccaacgcctgtccgtgctgcacaaactcgcgcacccggacggtcagcccgtcaaggtc
atcgtctcgaccgtgcgcagcctcatccagccgatggcgcccggtctcggcgatctcgcg
cccgtgtacctcaagaccggcgacgagcacgacttcgaccagctgatcgagcagctcgtc
gtgctcgcgtactcgcgggtcgacatggtcgagaaacgcggcgagttcgctgttcgcggc
ggcatcctcgacctcttcccgcccaccgccgagcacccgttccgcgtcgagttctggggc
gacgaggtcagcgagatccggccgttctccgtggccgaccagcgctcgctgccgacgaag
gtcaccgaggtgaccgcgccgccgtgccgcgagctgctgctcaccgagtcggtcaagctc
cgcgccgcggacctggcgaccgaccacgcgggcgacgcgcacctggccgagatgctgacc
aagctctccggcggcatccccgtcgagggcatggaggcgttgatccccgtgctctgcgac
ggcgagctggagctgctcaccgacgtcctgcccgagggctcgcacgtgctggtgatcgac
ccggagaagatccgcacccgtgcgcacgacctggtccgcaccggccaggagttcctcgaa
gcctcgtggatggccgccgccggtggcggcaaggcgccgatcgacctcggcgcgtcggcg
taccgcgaactgggcgaaatcgtcacgcacgcacgcgaaaccggccgcaactggtggacg
ctcagccagctcaccggcgccgacgacgtgctttcccttggcatcaaaccgatcgactcg
taccgcggcgacatcgaacgcgccttcgctgaccttcgggcgcacaccgccaccggggga
gcggcggttctcgtcgtgcccggcagcggcaccgcgcagcgtgcggtagagcagatgggc
gaggccgaggtcccggccaggttcgccgccgacgggctgaccgaggcgcctcaagcgggt
gtcgtcacggttgtccgcggtgcgctcgaagacggtttcacggcgccggactccgcgctc
gtcgtgctcaccgagacggcgctgaccggcggcaggcacggcacgtccacaagggacatg
tcggcgaagatgccgtcccggcgccgcaacgccgtcgacccgctggccctcagggccggc
gactacgtggtgcacgagcagcacggcatcggcaagtacatcgagatggtccagcgcacg
gtcgcgggcgccacgcgtgagtacctcgtgctggagtacggatcgtccaagcgcggccag
cccggcgaccgcctgttcgtgccgaccgaccagctcgacgaggtctcccgctacgtcggc
ggcgagctgccgacgctgaacaagctcggcggctcggactggaagaacacgaaagccaag
gcgcgcaaggccgtcaagcagatcgcggccgagctcgtgcagctctacgcggcccgccag
tccgcgccggggcacgcgttcgggccggacaccccgtggcagcgcgaactggaggacgcg
ttcccgttcaccgagaccgtcgaccagatggccgcgatcgacgaggtcaagggcgacatg
cagcgcggtgtcccgatggaccgcgtgatctgcggtgacgtcggctacggcaagaccgag
atcgccgtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgtcgtgctcgta
ccgaccacgctgctggcccagcagcacctgaacacgttcgccgagcggatgcggtccttc
ccggtgaacatcaagggcctgtcccggttcaccgaccccggcgagtccgagcagaccctc
gcggcgctggccgacggcgaggtcgacatcgtgatcggcacgcaccggctgctgcagacc
ggcatccgctacaaggacctcggtctggtgatcgtcgacgaggagcagcgcttcggcgtc
gagcacaaggaacacatcaaggccctgcgcacgcacgtggacgtgctcaccatgtccgcc
acgccgatcccgcgcacgctggagatgtcgctggccggaatccgcgagatgtccacgatc
ctgaccccgccggaggaccggcacccgatcctgacctacgtcggcggctacgacgacaag
caggtcggcgcggcgatccggcgtgagctgctgcgtgacggccaggtgttcttcgtgcac
aaccgcgtctcgtcgatcgaacgcgccgccaagcggatccgcgaactcgtgccggaggcc
cgcgtggtcaccgcgcacggccagatgaacgaggaccgcctggagaagatcatccagggt
ttctgggagcgcgaacacgacgtgctcgtgtccaccacgatcgtcgagacaggcctggac
atctccaacgccaacaccctgatcgtcgagcgcggcgacctgctcggcctcgcccagctg
caccagctgcgcggccgggtcggccgtggccgcgaacgcgggtacgcgtacttcctgtac
ccgccggaggcgccgctcaccgagaccgcgcacgaccggctggccacgatcgcgcagaac
accgaactcggcgcgggcatggccgtggccatgaaggacctggagatccgcggcgcgggc
aacatcctcggggcggagcagtccgggcacatcgcgggcgtcggcttcgacctctacgtc
cggctcgtcggtgaagccgtcgaagcgttccgcaggcacgcgggcgcggacgggcccgaa
ggcgaggaggagctggccgaggtccgcgtggacctgccggtcgacgcgcacatcccgcac
gactacgtgcccggcgagcggctgcggctggaggcgtaccgcaagatcgccgcggcccgc
gacgccgacgagctcaccggcgtgatggaggagctcaaggaccgctacggcgcgccgccg
ctgccggtcgagcggctcttcgcggtggcgacattccgccaggcatgccgcggccacggc
gtcaccgaggtcatcacccagggcgccatgatccggttcgccccgctcgacctgcgcgac
tcccagatcgtccggctcaagcggctgcacccgaaggccaactacaaggcggtcaccaac
accgtcgtggtgcctcgcccgaccgagggaccggccggtggccggatcggcgcgccgcac
ctgcgtgaccaggagctgctcaagtggtgcacggacttcctggagagcctggtgatcgcc
ccggccccagtcgggtga

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