Pantoea piersonii: N5580_02540
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Entry
N5580_02540 CDS
T08710
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kpie
Pantoea piersonii
Pathway
kpie02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kpie00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
N5580_02540 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpie03021
]
N5580_02540 (rpoD)
Transcription machinery [BR:
kpie03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N5580_02540 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HAP1_N
PAC1
TMEM120A-B
DUF6671
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
WBG91459
UniProt:
A0AAJ5UAA5
LinkDB
All DBs
Position
complement(503696..505540)
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSADTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDKVEAGESRLSDLITGFVDPNAEEDLAPTA
THVGSELSEEDRDDDEEEDEESEDDNSDDDNSIDPELAREKFVELRTQYETTRTVIKSKG
RSHADAVKEIQNLSDVFKQFRLVPKQFDYLVNNMREMMERVRTQERIIMKLCVELCKMPK
KNFITLFTGNETSESWFKAALAMNKPWSEKLKEVEEDVMRCLQKLHQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSES
LRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagctgcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccagatgattaacgatatgggtattcaggtggtggaagaagcccct
gatgccgacgatctgatgctgaacgaaaacagcgccgatactgacgaagatgccgcggaa
gccgccgctcaggtgttatccagcgtagaatctgaaattggccgcaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgttgagctgctgacgcgcgaaggcgaaatcgac
atcgccaagcgcatcgaagacggtatcaaccaggtacaatgttcggttgcggaatacccg
gaagccattacctatctgctggagcagtacgacaaagtcgaagcgggcgagtctcgcctc
tccgacctgatcaccggcttcgtggatccaaacgctgaagaagatctggcgcctaccgcc
acccacgtcggctcagagctgtctgaagaagaccgcgacgacgacgaagaagaagacgaa
gagagcgaagacgacaattccgacgacgataactctatcgatccggaactggcgcgcgag
aaattcgtcgagctgcgcacgcagtatgaaacgacccgcaccgtcatcaagagcaaaggt
cgcagccatgctgacgcagtaaaagagattcagaacctttctgacgtctttaagcagttc
cgcctggtgccgaagcagttcgactacctggtcaacaacatgcgagagatgatggagcgc
gtgcgtacgcaagagcgcatcatcatgaagctgtgcgttgaactgtgcaaaatgccgaag
aaaaacttcatcacgctgttcaccggcaacgagaccagcgagagctggttcaaagccgcg
ctggccatgaataaaccctggtcagagaagctgaaagaagtagaagaagatgtgatgcgc
tgtctgcagaaactgcatcagatcgaagaagagaccggcctgaccatcgagcaggttaaa
gatatcaaccgtcgcatgtctatcggcgaagcgaaagcgcgtcgtgcgaagaaagagatg
gtagaggcgaacctgcgtctggtgatttcaattgcgaaaaaatacaccaaccgcggtctg
cagttcctcgacctgattcaggaaggcaacatcggcctgatgaaagcggttgataagttt
gaataccgtcgtggttataagttctctacctatgccacatggtggatccgtcaggcgatt
acccgctctatcgccgaccaggcgcgtaccatccgtattccggtgcatatgattgagacc
atcaacaagctcaaccgtatttcgcgccagatgctgcaggagatgggccgcgagccgacg
ccggaagagctggccgagcgtatgctgatgccggaagacaagatccgcaaagtgttgaaa
atcgccaaagagccgatttctatggagacgccgatcggcgacgacgaagattcgcatctg
ggcgactttatcgaagacaccacgctggagctgccgcttgactctgctacctctgagagc
ctgcgttcagccacccacgacgtgctggcgggcctgaccgcgcgtgaagccaaagtgctg
cgtatgcgtttcggcatcgatatgaacaccgaccatacgcttgaagaggtgggcaaacag
tttgacgtaacgcgtgagcgtattcgtcagattgaagcgaaagcgctgcgtaagctgcgc
cacccgagccgttcagaagtgctgcgcagcttcctggacgactaa
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