Pantoea piersonii: N5580_03560
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Entry
N5580_03560 CDS
T08710
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
kpie
Pantoea piersonii
Brite
KEGG Orthology (KO) [BR:
kpie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kpie03009
]
N5580_03560 (rlmD)
Enzymes [BR:
kpie01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
N5580_03560 (rlmD)
Ribosome biogenesis [BR:
kpie03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
N5580_03560 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
TRM5-TYW2_MTfase
RrnaAD
MTS
Methyltransf_23
Cons_hypoth95
Methyltransf_4
Methyltransf_15
Methyltransf_ANTKMT
Ribosomal_L22
PDGF
Methyltransf_11
PrmA
Motif
Other DBs
NCBI-ProteinID:
WBG91649
UniProt:
A0AAJ5QM66
LinkDB
All DBs
Position
751275..752591
Genome browser
AA seq
438 aa
AA seq
DB search
MAQFYSAKQRVTTKQRITVTVDELDPFGQGVARHQGKTLFISGALPGEQAEVTLVEEKRQ
YARGKATRLLSTSPERVKPRCPHFTRCGGCQQQHAAEPLQQRSKASALSRMLSQAAQRTV
AVDAILAGPAWGYRRRARLGLQWQPKTRELQMGFRQEASNDLVAIRECPILAPELEALLL
PLRDCLSALKAASRLGHVELVLADNGPLMVLRHLDALHAADREKLERFSHEHNLMLFLDS
GGDELEQVRGDEPFYHSGEVRLTFSPQDFIQVNDAVNQQMVAQALAWLDLQPEDRVLDLF
CGMGNFTIPVGKFVQNVVGVEGVAALVRQAAYNAQLNNLKNVRFFQHNLEEDVARQPWAA
QGFNKVLLDPARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQTLLSAGYHLERVAML
DMFPHTRHLESMVLFSKT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttactccgcaaaacagcgcgtgacgactaagcaacgcatcaccgtcacc
gtggacgagctcgatccctttggccagggcgtagcgcggcatcagggcaagaccctgttt
atcagcggcgcgctgcctggcgagcaggcggaagtgacgctggtggaggagaaacgtcag
tacgcgcgcggcaaagcgacgcggctgttaagcaccagcccggaacgcgtcaagccgcgc
tgtccgcactttacccgctgcggcggctgccagcagcagcacgctgccgagccgctgcag
cagcgcagcaaagcgtcggcgctgtcgcgcatgctgagccaggcggcgcagcgcaccgtc
gcagtggacgcgatcctcgccgggcctgcctggggctaccgtcgtcgcgcgcggcttggt
ttgcagtggcagcctaaaacgcgcgagctacagatggggtttcgccaggaggcgagcaac
gatctggtggcgattcgcgaatgccccattctggcgcccgaacttgaggcgttgctgctg
ccgctgcgcgactgtctcagcgcgctgaaggccgccagccggctgggacacgttgagctg
gtgctggcggacaacggcccgctgatggtgctgcgccacctggatgcgctgcacgccgcc
gaccgggaaaaactggaacgcttttcgcatgagcacaacctgatgctgttcctggacagc
ggcggcgatgagctggagcaggtgcgcggcgacgaacctttttaccactcgggcgaggtg
cggctcacctttagtccgcaggactttattcaggtcaacgacgccgtcaaccagcagatg
gtggcgcaggcgttagcctggctcgatcttcagccggaagaccgcgtgctggatcttttt
tgcggcatgggaaactttacgatccctgtaggaaaattcgtacaaaatgttgtgggtgtg
gagggcgttgcagcattagtgcggcaggcagcgtataatgcgcagctgaataatcttaaa
aatgtccgctttttccagcacaacctggaggaagacgttgcgcgtcagccgtgggcggcg
caaggatttaacaaggtattgctcgatccggcgcgcgccggggccgcgggcgtaatggcg
catgtggttaaacttgcgccggagcgcgtggtctatgtttcgtgtaatcccacaacgctt
gcccgcgacagccagacattgctgtcggcgggctaccatctggaaagggtcgcgatgctg
gatatgttccctcatacccgtcatctcgaatccatggtgctgttcagtaaaacataa
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