Pantoea piersonii: N5580_08720
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Entry
N5580_08720 CDS
T08710
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kpie
Pantoea piersonii
Brite
KEGG Orthology (KO) [BR:
kpie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpie03019
]
N5580_08720 (hrpA)
Enzymes [BR:
kpie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
N5580_08720 (hrpA)
Messenger RNA biogenesis [BR:
kpie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
N5580_08720 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
HA2_N
PhoH
T2SSE
nSTAND3
ResIII
SLFN-g3_helicase
AAA_23
NACHT
AAA_30
AAA_25
TsaE
Motif
Other DBs
NCBI-ProteinID:
WBG92579
UniProt:
A0AAJ5QP77
LinkDB
All DBs
Position
1849947..1853849
Genome browser
AA seq
1300 aa
AA seq
DB search
MSSPVSSPFASLWSRLDNLMLRDRQRLQRRLRGASKVNNPAAQQGVADEISQEIAAAEQR
VAARAAATPKITFPDNLPVSQKQQQIAEAIRDHQVVIVAGETGSGKTTQLPKICLTLGRG
VKGLIGHTQPRRLAARTVANRIADELETSLGGCIGYKVRFNDQVSETTQVKLMTDGILLA
EIQQDRLLLQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPQRFSRH
FHNAPVIEVSGRTFPVEVRYRPVVEEADDSERDQLQAIFDAVDELSDEGRGDILIFLSGE
REIRDTADALAKRDLPHTEILPLYARLSNAEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEDDFLSR
PAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGALTLNDE
TGHYKLTSSGRQLAQLPVDPRLARMVLEAQRFGCVREVMIIASALSIQDPRERPVEKQQA
ADEKHRRFADKESDFLAFVNLWNYLGEQQKALSGNQFRRQCKGDFLNYLRVREWQDIYTQ
LRQVVRELGIPVNSEPAGFREVHCALLTGLLSHIGMKDAEKQEFTGARNARFAIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWIEPLAQHLIKRSYSEPHWEKGQGAVMAQE
KVTLYGLPIVAARKVNYGRIDPALSRELFIRHALVEGDWQTRHAFFRNNQKLRSEVEDLE
HKSRRRDILVDDETLFGFYDQRVGQDVVSAKHFDSWWKLASRDNPDLLSFDKQMLIKEGA
EKVSQLDYPNFWHQGNLKLKLSYQFEPGADADGVTVHIPLPLLNQVEDQGFEWQIPGVRR
ELIIALIKSLPKPLRRNLVPAPNYADAFLGRVTAMEMPLLDALAKEFRRMTGVTLERENW
QWDQVPDHLKMTFRVVDEHNRKLKEGKDLSALKAELKEKVQETLSKVADDGLEQNGLHIW
SFGDLPRSYEQKRGGYQVKAWPALVDEKDSVAIRLFDSEQEQQKMMWRGQRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCIACGVDKLMAEAGGPAWQQENFEQLREK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALALSDIKAQMSGLVYRGFVTG
NGWKRLGDTLRYLHGIERRLEKLPADPHSDRARMLKVQAVEQAWQAWRNKLPPQRQDDEE
VKEVRWMIEELRISYFAQQLGTPYPVSDKRILQTMEQYAA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaccggtttcctctccctttgcatcgctgtggtcgcgactcgacaacctgatg
ctgcgtgaccgtcaacgccttcagcgccgtctgcgcggcgccagcaaggtgaacaacccc
gctgcgcagcagggcgtcgccgacgaaatcagtcaggagatcgccgcagcggaacagcgc
gtcgccgcgcgtgccgccgcgacgccgaaaattacctttcccgataatctgcccgtcagc
cagaagcagcagcagatcgccgaagcgatccgcgatcatcaggtggtgatcgtcgctggc
gaaaccggttcgggtaaaaccacccagctgccgaaaatctgtctgacgctggggcgcggc
gtgaaagggctgatcggtcatacccagccgcgtcgtctggcggcgcgcaccgtcgccaac
cgtattgccgatgagctggaaacgtcgcttggtggctgcatcggctataaggtgcgcttt
aacgatcaggtcagcgaaaccacccaggtgaagctgatgaccgacggtattttgctggcg
gaaatccagcaggaccgcctgctgttgcagtatgacaccatcattatcgatgaggcgcac
gaacgcagcctgaacatcgatttcctgctcggctatctgcgcgagctgctgccgcgccgt
cccgatctgaaaatcatcatcacctcggcgaccatcgatccgcagcgcttttcgcgccac
ttccataacgcgcccgttattgaagtatcgggccgtactttcccggtcgaggtgcgttac
cggccggtggtggaagaggcggacgacagtgagcgcgaccagctgcaggcgatcttcgac
gcggtcgacgagctgagcgacgaagggcgcggtgatattctgatctttctgagcggcgag
cgcgaaattcgcgacaccgccgacgcgctggcgaagcgcgacctgccgcatacggaaatt
ctgccgctctatgcgcgcctgtcgaacgccgagcagaaccgggttttccagtcgcacagc
ggacgccgcatcgtgctggcgaccaacgtagcggaaacgtcgctcaccgtaccgggcatc
aaatatgttatcgatcccggcaccgcccgcattagccgctacagctatcgcaccaaggtg
cagcgtctgccgatcgagccgatttcacaggcgtcggctaaccagcgtaaaggacgctgc
ggccgcgtttcagatggcatctgtatccggctctattccgaggatgacttcctcagccgc
ccggcctttaccgatccggagatcctgcgcactaacctggcgtcggttattctgcagatg
acggcgctggggctgggcgatatcgccgcgtttccctttgtcgaagcgcccgacaagcgc
aatattcaggatggcgtgcgcctgctggaagagcttggcgcattaacgctcaacgacgag
accggccactacaagctgaccagctctggccgtcagctggcgcagctgccggttgatccc
cgtctggcgcgcatggtgctggaggcgcagcgcttcggctgtgtgcgtgaggtgatgatt
atcgcgtcggcgctgtcgattcaggatccgcgcgagcgcccggtagagaaacagcaggcc
gccgatgagaaacatcgtcgtttcgccgacaaagagtcggactttctcgccttcgttaac
ctctggaattacctgggcgaacagcagaaagcgctgtcgggcaaccagttccgccgccag
tgcaaaggggatttcctgaactatctgcgcgtgcgcgaatggcaggatatctatacccag
ctgcgccaggtggtgcgtgagctgggtattccggttaacagcgaaccggcgggcttccgc
gaggtgcactgcgcgctgctgaccggcctgctgtcgcatatcggcatgaaagacgccgag
aagcaggagtttaccggcgcgcgcaacgcgcgtttcgccattttccccggctcagggctg
tttaaaaagccgccgaaatggaccatggtcgccgagctggtagaaaccagccgcctgtgg
ggccggatcgcggcgcgtatcgatccggagtggatcgagccgctggcgcagcacctgatc
aagcgcagctacagcgagccgcactgggaaaaaggtcagggcgcggtgatggcgcaggag
aaagtcacgctgtacggtctgccgatcgtggccgcgcgcaaggtgaactacgggcgtatc
gatcccgcgctgagccgcgagctttttatccgtcatgcgctggtggaaggcgactggcag
acgcgccacgcctttttccgcaacaaccagaaactgcgcagcgaggtcgaagaccttgag
cacaaatcacgtcgtcgcgacattctggtcgatgatgagacgctgttcggcttttatgac
cagcgcgtcggccaggacgtggtgtcagcaaaacacttcgatagctggtggaagctggcg
agccgcgataatcccgatttgctcagctttgacaaacagatgctgatcaaagagggcgcg
gagaaggtcagccagctcgactatcccaacttctggcatcagggcaacctcaagctgaag
ctcagctatcagttcgagccgggcgcggacgccgacggcgtaacggtgcatatcccgctg
ccgctgcttaatcaggtcgaggatcagggcttcgagtggcagatccccggcgtgcgccgc
gagctgattattgcgctgattaagtcgctgccgaagccgctgcgccgtaatctggtgccc
gcgcccaattacgccgacgccttcctggggcgcgttactgcgatggagatgccgctgctc
gacgcgctggcgaaagagtttcgccgtatgaccggcgtgacgctggagcgggaaaactgg
cagtgggatcaggtgcccgatcacctgaaaatgaccttccgcgtggtagatgaacacaac
cgcaagctgaaagagggtaaagatctcagcgcgctgaaagccgagctcaaggaaaaagtg
caggagaccctgtcaaaagtggcggatgacgggctggagcagaacggcctgcatatctgg
agctttggcgatctgccgcgcagctatgagcaaaagcgcggcggctatcaggtcaaggcc
tggccagccctggtcgatgagaaggatagcgtggcgatacgcctgttcgacagcgagcag
gagcagcagaaaatgatgtggcgcggccagcgtcgtctgctgctgctgaatatcccttcg
ccgataaaatacctgcacgaaaagctgccgaataaagccaagctgggactctacttcaac
ccatacggcaaagtgctggatctgatcgacgactgcatcgcctgcggcgttgacaagcta
atggcggaagcgggcggcccggcctggcagcaggaaaatttcgagcagctgcgcgagaaa
gtgcgcgctgagctaaacgatacggtggtagagattgcgaaacaggttgagcagatcctg
acggcggtgttcaacatcaacaagcggctgaaagggcgcgttgatatgacgatggcgctg
gcgctgtcagatatcaaggcgcagatgagcggtctggtctatcgcggcttcgttaccggc
aacggctggaaacgcctgggcgacacgctgcgctatctgcatggcattgagcgtcgtctg
gaaaaactgcctgccgatccgcacagcgatcgcgcgcgcatgctgaaggtgcaggcagtg
gagcaggcctggcaggcgtggcgtaataaactgccaccgcagcgtcaggatgatgaagag
gtgaaggaggttcgctggatgatcgaggagctgcgcatcagctacttcgcgcagcagctc
ggcaccccttatcccgtttctgacaagcgcatcctgcaaacgatggagcagtacgcggcg
taa
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