Pantoea piersonii: N5580_15345
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Entry
N5580_15345 CDS
T08710
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
kpie
Pantoea piersonii
Brite
KEGG Orthology (KO) [BR:
kpie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpie03021
]
N5580_15345 (rapA)
Transcription machinery [BR:
kpie03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
N5580_15345 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
ApoB100_C
Spc24
Motif
Other DBs
NCBI-ProteinID:
WBG90442
UniProt:
A0AAJ5U9H7
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All DBs
Position
3222308..3225214
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AA seq
968 aa
AA seq
DB search
MVFTLGQRWISDTESELGLGTVVAADARMVTLLFPATGENRLYARNDSPVTRVIFNPGDT
VTSHEGWQMRVDEVRNENDLMTYIGTRLDTDESEVVLREVMLDSKLVFSKPQDRLFAGQL
DRMDRFALRYRARKYQSAQYRLPVSGLRGMRTNLIPHQLHIAHDVGRRHAPRVLLADEVG
LGKTIEAGMIIQQQLLAGRADRVLIIVPETLQHQWLVEMLRRFNLRFALFDDDRYAEAQH
DSDNPFETEQLIICSLDFVRRNKQRLELLAEAEWDLMVVDEAHHLAWSEGEPSREYAVIE
QLAEQIPGVLLLTATPEQLGMESHFARLRLLDPDRFHDFAQFLEEQQHFRPIADAVSSLL
ADKAISQDEMNMINDLVGEEDIEPLLQVANSERDGKLEARKELISMLMDRHGTSRVLFRN
TRNGVKGFPKRELHQIRLPLPAQYQTAIKVSGIMGARKSAEERARDLLYPEQIYQEFEGD
SGTWWNFDPRVEWLLGYLTSNRKEKVLVICAKAATALQLEQVLREREGIRAAVFHEGLSI
IERDRAAAWFASEENGAQVLLCSEIGSEGRNFQFSSRLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIMVPWLEKTAQAVLLRWYHEGLDAFEHTCPTGRTIYDSVHQPLINFLAAPENS
EGLDEFIAECRKQHESLKSQLEHGRDRLLELNSNGGEAAQALAAEIAAQDNDTELVNFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPEDGCTITFNRDQALSREDTQFITWE
HPLIRNGLDLILSGDTGSCALSLLKNKALPVGTLLVETIYVVEAQAPKHLQLTRFLPPTP
IRMLLDRNGTNLAGKVEFESFNRQLNAVNRHTGSKLVNAVQQDVHAILMQAEEKVVAEAQ
TLIDAARAEADERLGAELSRLEALKAVNPNIREDEIEALESNRQQVLESLSQANWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggtttttacattaggtcagcgctggattagtgatacggaaagtgaactgggactcggc
acggtcgtggcggcagacgcgcgcatggttacgctgctgtttccggcaacgggtgaaaac
cgcctctatgcccgtaacgactccccggtgactcgcgttatctttaatccgggcgatacg
gtgaccagccacgaaggctggcaaatgcgcgtcgatgaagtacgcaatgaaaatgacctg
atgacctatatcggcacgcgtcttgatactgacgaaagcgaagtggtgctgcgggaagtg
atgctcgacagcaagctggtgttcagcaaaccgcaggatcgcctgttcgccggtcagctc
gaccgcatggaccgcttcgccctgcgctatcgcgcccgcaaatatcagagcgcccagtat
cgcctgccggtcagcggcctgcgcggtatgcgcaccaacctgatcccgcatcagctgcat
atcgcccatgacgtgggccgccgtcacgcgccgcgcgtgctgctggcggacgaagtgggc
ctcggcaaaaccattgaagccggcatgattatccagcagcagctgctggccgggcgcgcc
gatcgcgtcttgatcatcgtgccggaaaccctgcagcaccagtggctggtagagatgctg
cgccgctttaacctgcgtttcgcgctgtttgacgacgatcgctacgccgaggcgcagcac
gacagcgacaacccctttgagaccgaacagctgattatctgctcgctcgatttcgttcgt
cgcaacaagcagcgccttgaactgctggcggaggctgaatgggatctgatggtggtcgac
gaagcgcaccatctcgcctggagcgaaggggagccgagccgcgaatatgcggttatcgaa
cagctggcggaacagatccccggcgtgctgctgctgaccgcgacgccggaacagctgggt
atggagagccacttcgcgcgtctgcgtctgctcgaccctgaccgcttccacgacttcgcg
cagttcctcgaggagcaacagcattttcgtccgattgccgacgcggtctcctcgctgctg
gctgataaagccatctcgcaggatgagatgaatatgatcaacgatctggtgggcgaagag
gatattgagccgctcctgcaggtcgccaacagcgagcgcgacggcaaactcgaggcgcgc
aaagagttgatctctatgctgatggatcgccacggcaccagccgcgtgctgttccgcaac
acgcgtaacggcgtgaagggcttcccgaaacgcgagctgcatcagatccgtctgccgctg
cccgctcagtatcagaccgccatcaaggtctccggtattatgggcgcccgcaaaagcgcg
gaagagcgcgcacgcgacctgctctaccccgagcaaatttatcaggagtttgaaggcgac
agcggtacctggtggaacttcgatccacgcgtcgagtggctgcttggctacctgaccagc
aaccgcaaagagaaagtgctggtgatctgcgccaaagcggccaccgcgctacagctggag
caggtgctgcgcgagcgcgaaggcatccgcgccgccgtgttccacgaaggattgtcgatt
atcgaacgcgaccgcgccgccgcctggttcgcctcagaagagaacggcgcgcaggtgctg
ctctgctcggaaattggttctgaagggcgcaacttccagttttccagccgcctggtgatg
ttcgatctgccctttaacccggatctgctggagcagcgcatcggtcgtctcgatcgtatc
ggtcaggcgcacgacattcagattatggtgccctggctggagaagaccgctcaggcggtg
ctgctgcgctggtatcacgaagggctcgacgcgttcgagcatacctgcccgaccggccgc
actatctacgacagcgtccatcagccgctgattaacttccttgccgcgccggaaaacagc
gaaggtctggatgaatttatcgccgagtgccgcaagcagcacgagtcgctgaagtcgcag
ctggagcacgggcgcgaccgtctgctggagctcaactccaacggcggcgaagcggcgcag
gcgctggcggcggagatcgccgcgcaggataacgacaccgagctggtgaacttcgcgctc
aacctgttcgatatcgtcggtatcaatcaggaggatcgcagcgataacctcatcgtgctg
acgccctccgatcatatgctggtgcccgatttccctggtctgccggaagatggctgcacc
atcacctttaaccgtgaccaggcgctgtcgcgcgaagatacccagttcatcacctgggag
catccgctgatccgcaacggtctggatctgatcctctccggcgacaccggcagctgcgcg
ctgtcgctgctgaaaaacaaggcgctgccggtaggcacgctgctggtcgagacgatctac
gtggtagaagcgcaggcgccgaagcatctgcagctgacccgttttctgccgccgacgccg
atccgcatgctgctggatcgcaacggcaccaacctggcgggcaaggtcgagtttgaaagc
tttaaccgtcagctcaatgcggtgaatcgccacaccggcagcaagctggtcaacgcagtg
cagcaggacgtacacgcgattctgatgcaggctgaagagaaagtggtggcggaagcgcag
acgctgatcgacgcggcgcgcgccgaagcggacgagaggctgggcgcggagctgtcgcgt
cttgaagcgctgaaggcggtcaatcccaacatccgtgaagatgagattgaggcgctggag
agcaatcgtcagcaggtgctggaaagcctgagccaggcgaactggcgtctcgacgcgctg
cgcctgatcgtggtcacgcatcagtaa
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