Pantoea piersonii: N5580_16045
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Entry
N5580_16045 CDS
T08710
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kpie
Pantoea piersonii
Pathway
kpie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N5580_16045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpie03019
]
N5580_16045
03009 Ribosome biogenesis [BR:
kpie03009
]
N5580_16045
Enzymes [BR:
kpie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N5580_16045
Messenger RNA biogenesis [BR:
kpie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N5580_16045
Ribosome biogenesis [BR:
kpie03009
]
Prokaryotic type
rRNA helicases
N5580_16045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
DeaD_C
ResIII
CMS1
UTP25_NTPase-like
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WBG90571
UniProt:
A0AAJ5QI63
LinkDB
All DBs
Position
complement(3372324..3374237)
Genome browser
AA seq
637 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPSLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVENRERRLLRNIE
RTMKLTIPEVELPNAELLSTRRLEKFAGRVQQQLESSDLDQYRALLEKLSPQDELDMETL
AAALLKMAQGERPLIVQPDAPRPQRREFRDRDDRRDDRRSPREARDNREGGERPRRERRD
VGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDIL
QHFTRTRILNKPMNMQLLGDAQPQSDARGGERRSGGRDFGGERRGGNREAGREGGRRFSS
ERREGGREGGRSSFSREGGRGPRREEGAAAAPRRREF
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgacctgggcctgaacgccgacatcctcgaatca
ctgaacggcatgggctatgttaagccttctccgatccaggctgagtgtattcctcacctg
ctggcgggccgtgatgtactgggcatggcgcagaccggcagtggtaaaactgcagcgttc
tcgctgccgctgttaaacaacattgatccttctcttcgcgcaccgcagatcctggtgctg
gcgccgactcgcgagctggcggtgcaggttgcagaagcgatgaccgaattctctaaacat
atgcgtggcgtcaacgtcgtggccctttacggcggccagcgttatgacgtgcagctgcgc
gcgctgcgtcagggcccgcaaatcgtggtgggcaccccgggtcgtctgctcgaccacctg
aaacgtggcacgctggatctctccagcctgcgtggcctggtgctggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgcgctgttctcagcgaccatgccggaagcgatccgtcgcatcaccaagcgt
ttcatgaaagatccgcaggaagtacgcattcagtccagcgttacgacgcgtccggacatc
agccagtcttactggacggcgtacggtcgtaaaaccgacgcgctggtgcgtttcctggaa
gcggaagatttcgatgccgctattatcttcgtgcgtactaaaaacgcgacgctggaagtg
gccgaagcgctggagcgcaacggttacaacagcgcggcgctgaacggcgacatgaaccag
gcgctgcgcgagcagacgctggaacgtctgaaagatggccgtcttgatatcctgatcgca
accgacgttgcggcgcgtggtctggacgttgagcgtatcagcctggtcgttaactacgac
atcccgctggatgccgagtcttacgtgcaccgtatcggtcgtacaggccgcgcgggccgt
gctggccgtgccattctgttcgtcgagaaccgtgagcgtcgtctgctgcgcaacattgag
cgcaccatgaagctgactattccggaagtggaactgccgaacgccgaactgctgagcacc
cgtcgcctggagaaattcgccggacgcgtacagcagcagctggaaagcagcgatctggac
cagtaccgtgcgctgctggagaaactttctccgcaggacgagctggatatggaaacgctg
gccgctgcgctgctgaaaatggcgcagggcgaacgtccgctgatcgtgcagccggatgcg
ccgcgtccgcagcgtcgtgagttccgcgatcgtgacgatcgtcgtgacgaccgtcgcagc
ccgcgtgaagcgcgtgacaaccgcgaaggcggcgaacgtccgcgtcgcgaacgtcgcgac
gttggcgaaatggagctgtaccgcattgaagttggccgtgatgacggcgttgaagttcgt
cacatcgttggcgctatcgctaacgaaggcgacatcagcagccgctacatcggcaacatc
aagctgttcggcacccactcgactatcgagctgccgaaaggcatgccgggcgatatcctg
cagcacttcacccgcacgcgtattctcaataagccgatgaatatgcagctgctgggcgat
gcgcagccgcagagcgatgcgcgcggcggcgaacgtcgcagcggtggtcgtgacttcggc
ggcgagcgtcgtggcggcaaccgtgaggctggtcgtgaaggcggacgtcgtttctcttcc
gagcgtcgcgaaggcggtcgtgaaggcggacgtagcagcttcagccgtgaaggcggtcgc
ggtccgcgtcgcgaagaaggcgctgcagcagcaccgcgtcgtcgcgagttctga
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