Pantoea piersonii: N5580_17065
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Entry
N5580_17065 CDS
T08710
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kpie
Pantoea piersonii
Pathway
kpie03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kpie00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N5580_17065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpie03021
]
N5580_17065 (rpoC)
03400 DNA repair and recombination proteins [BR:
kpie03400
]
N5580_17065 (rpoC)
Enzymes [BR:
kpie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N5580_17065 (rpoC)
Transcription machinery [BR:
kpie03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N5580_17065 (rpoC)
DNA repair and recombination proteins [BR:
kpie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N5580_17065 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WBG90762
UniProt:
A0AAJ5QHT4
LinkDB
All DBs
Position
complement(3595980..3600203)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEHEKNEQDEWVAKTSIIDTTIGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGEEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLDEHWCDVVEQNSVDTIKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGAIMAKGDGEQVAAGETVANW
DPHTMPVITEVSGYIRFTDMIDGQTITRQTDELTGLSSLVVLDTAERTSGGKDLRPALKI
VDEQGEDVLIPGTDMPAQYFLPGKAIVQLEDGKKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIMSAGSTDFLEGEQAEVSRIKISNRDLEANGKIGATYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPV
APQVTADEASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgcgctggcttcgccagacatgatccgttcctggtctttcggtgaagtgaaaaag
ccggaaaccattaactaccgtaccttcaagccagagcgtgatggtcttttctgcgcccgt
attttcggaccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgcgagaagtgcggcgtcgaagtgacccagaccaaagtgcgccgtgag
cgcatgggccacatcgaactggcttctccgaccgcgcacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgcgtgctctat
ttcgaatcttacgttgttgtcgaaggtggcatgaccaacctcgaaaaacgtcagattctg
accgaagagcagtaccttgacgcgctggaagagttcggcgacgaattcgacgcgaaaatg
ggcgccgaagcgatccaggctctgctgaaaaatatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgagaccaagcgtaagaagctgaccaagcgc
atcaagctgctggaagcgttcgtacagtccggcaacaagccggagtggatgatcctgacc
gtgctgccggtgctgccgccggatctgcgcccgctggttccgctggacggcggtcgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtcgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgcgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggcctgccgaagaaaatggcgctggagctgttcaaacccttt
atctacggcaagctggagctgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagcggttgtctgggatatcctggatgaagttatccgcgaacacccg
gttctgctgaaccgtgcgccgacgctgcaccgtctgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtgtgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacattctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtattatatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgaccggcccgaaagaagctgagcgtgtttatcgcgctggc
ctcgcatcgctgcacgctcgcgttaaggtacgtattaccgaacacgagaaaaacgagcag
gatgagtgggttgctaaaaccagcatcattgacaccaccattggccgcgccatcctgtgg
atgatcgtgccaaaaggtctgccgttctccatcgttaaccaggcgctgggcaaaaaagct
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttatcttt
gctgaccagaccatgtacaccggtttcgcttacgcagcccgttcaggcgcgtctgtcggc
atcgacgacatggttatcccagagaagaaagtggaaatcatcaccgaagcggaagcggaa
gtggctgagatccaggagcagttccagtctggtctggttaccgcgggcgagcgttacaac
aaagtcatcgatatctgggctgcggcgaacgagcgcgtagcgaaggcgatgatggaaaac
ctctcaactgagaccgtgattaaccgtgacggcgaagaagagaaacaggtttcctttaac
agcatctttatgatggccgactctggtgcgcgtggttctgcggcacagattcgtcagctg
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgagacgccgattacg
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttatctgacgcgtcgtctg
gttgacgttgctcaggatctggtcgtaacagaagatgactgcggcaccttcgaaggcatc
atgatgacgccggttatcgaaggcggcgacgttaaagaaccgctgcgcgagcgcgtgctt
ggccgtgtaaccgctgaagatgtgctgaagccgggcaccgctgacatcctggttccgcgt
aatacgctgctggatgagcactggtgtgatgtggttgaacagaactctgtcgacaccatc
aaagttcgctctgttgtaagttgtgaaaccgattttggtgtgtgcgcccactgctacggt
cgcgacctggcgcgtggtcacatcatcaacaaaggtgaagcgatcggtgttatcgcggca
cagtccatcggtgagccgggtacacagctgaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcagcagaatccagcattcaggtgaagaacaaaggtactatcaaactg
accaacgctaagtcggtaaccaactccgctggcaaactggttattacttcacgtaacgtc
gaactgaaaatgatcgatgagtttggccgtactaaagagagctataaagtcccttacggc
gcgatcatggcgaaaggcgacggcgagcaggttgcagcgggcgaaaccgtagcaaactgg
gatccgcacaccatgccggttatcaccgaagtaagcggctacattcgctttactgacatg
attgatggtcagaccatcacgcgtcagactgacgaactgacgggtctctcttcgctggtg
gttctggatactgctgagcgtacttctggcggtaaagacctgcgtccggcgctgaaaatc
gtcgatgagcagggcgaagatgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccgggcaaagcgatcgttcagctggaagacggtaagaaaatcagctctggtgatacc
ctggcgcgtgtgcctcaggaatctggcggtaccaaggatattaccggtggtctgccgcgc
gttgctgacctgttcgaagcgcgtcgtccgaaagagccagcaatcctggcggagatcagc
ggcatcatctccttcggtaaagagaccaaaggtaaacgtcgtctggtgatcacgccggtt
gatggcagcgagccttacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggtgagcgcgtagaacgtggtgacgtggtttccgacggtccggaatcgccgcacgacatt
ctgcgtctgcgtggcgtccatgctgtgacccgttacatcactaacgaagtgcaggaagtt
taccgcctgcagggcgttaagattaacgataagcacattgaagtcatcgttcgccagatg
ctgcgtaaagcaaccatcatgagcgcgggaagcaccgacttcctggaaggtgagcaggca
gaagtctctcgcatcaagatctctaaccgcgatctggaagcgaacggcaaaatcggcgca
acctatatgcgcgatctgctgggtatcaccaaagcgtcactggcaaccgaatcgttcatc
tcggcagcctcgttccaggagacgactcgtgtcctgaccgaagccgctgttgcaggcaag
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttacgcttaccatcaggatcgtatgcgtcgccgtcaggcgggcgaagcgccggtt
gctccgcaggttactgcggatgaagcctctgcaagcctggctgaactgttgaacgccggt
ctcggcggcagcgataacgactaa
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integrated database retrieval system
