Kwoniella pini: 30169767
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Entry
30169767 CDS
T10980
Symbol
I206_103599
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
kpin Kwoniella pini
Pathway
kpin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kpin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
30169767 (I206_103599)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpin03021
]
30169767 (I206_103599)
03019 Messenger RNA biogenesis [BR:
kpin03019
]
30169767 (I206_103599)
Transcription machinery [BR:
kpin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
30169767 (I206_103599)
Messenger RNA biogenesis [BR:
kpin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
30169767 (I206_103599)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_4
zf-CCCH_2
zf-CCHC_2
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
30169767
NCBI-ProteinID:
XP_070058899
UniProt:
A0AAJ8L5E5
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All DBs
Position
4:complement(join(1557182..1557265,1557328..1557706,1557805..1558252,1558335..1558476))
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AA seq
350 aa
AA seq
DB search
MAAAASSSTFLDPHLGRAADFVGPDFHQVNLDVEGYLKSQKGYKLDSDTQICPLSLTPLG
CPLPISQCPYRHTNPSASNFKPPPSLPTHPREREKKLTVCKHYLRNLCKMGDNCEYTHDW
NLRTMPICIMFLKQGKCELGGECLYFHKRDRRVECPDYNRGFCLFGPNCPRKHIRRKLCT
AYQIGFCPDGKHCKFVHPVADRPKPEEYINPIPPDPKQFTGPPPQLPAGYGRWREYKYDP
NAVVIPAPAWVEGGSLSGWRAGGFLSSNARRNDDRESGNGSSGPSGRSNHNNNHHHNDVP
AGAPAGYEKKTGWIKDLSTVLCFRCNSYGHFANACPNQAVPGDRGGLKRE
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcagctagctcttcgacatttttagaccctcatctgggtcgagcagcagat
ttcgtcggacctgattttcatcaagtcaacttagacgtagaagggtatttgaagtctcag
aaaggctacaagcttgattcggatacacaaatatgtccattatctttaactccattagga
tgtcctctaccaatttcacaatgtccatatagacatacaaacccttcagcatcaaatttc
aaaccaccaccttctttaccaacacatccaagagaaagagaaaaaaaattaacagtttgt
aaacattatttaaggaatttatgtaaaatgggagataattgtgaatatacacatgattgg
aatttacgtacaatgccaatttgtataatgtttttaaaacaaggtaaatgtgaattaggt
ggtgaatgtttatattttcataaaagagatagaagagttgaatgtccagattataatcgt
ggattttgtttatttggtccaaattgtccaagaaaacatattagaagaaaattatgtact
gcttatcaaattggtttttgtcctgatggaaaacactgtaaatttgtacatcctgttgcg
gatcgacctaaacctgaagaatatattaatccaattccacctgatccaaaacaatttaca
ggtccaccaccacaattaccagcaggatatggaagatggcgtgaatataaatatgatcca
aatgcagttgtaattcctgctcctgcatgggtagaaggtggttctttaagtggttggaga
gcaggtggatttttatcttcaaatgcacgtagaaatgatgatagagaaagtggaaatgga
agtagtggaccttcaggaagatcaaatcataataataatcatcatcataatgatgtacct
gctggtgcacctgcaggatatgaaaagaaaactggttggatcaaagatttatcaactgtt
ttatgtttcagatgtaatagttatggacattttgctaatgcttgtccgaatcaagctgta
cctggagacaggggtggtttgaagagagaatga
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