Kwoniella pini: 30171242
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Entry
30171242 CDS
T10980
Symbol
I206_102522
Name
(RefSeq) uncharacterized protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
kpin Kwoniella pini
Pathway
kpin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kpin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
30171242 (I206_102522)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpin03021
]
30171242 (I206_102522)
03019 Messenger RNA biogenesis [BR:
kpin03019
]
30171242 (I206_102522)
Transcription machinery [BR:
kpin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
30171242 (I206_102522)
Messenger RNA biogenesis [BR:
kpin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
30171242 (I206_102522)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH_4
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
30171242
NCBI-ProteinID:
XP_019012035
UniProt:
A0A1B9I5L3
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Position
3:complement(join(853730..855231,855289..855348,855414..855503,855631..856102))
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AA seq
707 aa
AA seq
DB search
MSVPLPSPSPLDSPSKSSNGNIGSNAKPIPKSRPSPITTNTPHSPSSPNFTASSSVNRGR
SGLSSSISRSMLNDDNWRDRSPATVTATATAIGTPSTAIINGKIGNGSTKGPERTVGGFE
KKEIKSTSTVSGLSANKDKKDNKDKKAGLEDQAESDKAALSHVPCRFFKAGACTAGDSCP
FSHAAPDAAKREVCQWFLKGNCKFGHKCALAHVRPGEPMSMDRKNKKAAQLEARERGDSV
SASAPPPAPSSGAGTGNTSGLGESPRPLGITRGRKNSTSPGEDQIASPVPIKSALSSSMQ
SPQAGRLPSSPLREPFGPPSGALPNSPNSAGFAQPRGIQGFASSPSRPSPLSGSFGASGS
VPGPLSLRASASNPLGSPLRPPVTTAPGFSSSFSHPSLSLDRHGHSAAPSVPLSASFAGD
ANLHKSIWARSDTPEEPLSPRRRPIPRPTKSNQDAVFIDDEDHGEDFLPSSLSDLLTPQE
RARRMSRRDSQGQEDFAQSPSGRYGSPLWNQGFASGGERLAQSAGPALGPGVGGFLNSLW
SADGEDARKSQNPDEFEVESPNTHTNQESQNGFAFGPTTAKQPPKRQTSLLTQQRSPTSG
SSSITSPTSPNRQIHMTEPYLIRNLDSSSPSATKVLESHLPGQSLPGGLASALSRLHMQN
SNNSKNQHSGLSIVNGQNNEEETNLQVIAKKGHTEEDEDDGLFDMDG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttccattaccttcaccttctccattagattcaccttcaaaatcatctaatgga
aatattggatcaaatgcaaaaccaataccaaaatcacgtccttcaccaataacaactaat
acgccacattcaccttcttcacctaattttacagcttcaagttcagtaaatagaggtaga
tcaggattatcttcttcaatttcaagatcaatgttaaatgatgataattggagagatcgt
tctcctgcaactgtaactgcaactgcaactgcaataggaaccccttcaacagctattata
aatggtaaaattggaaatggatctactaaaggacctgaaagaactgttggtggatttgaa
aagaaagaaatcaaatctacttctactgtatcaggattatcagctaataaagataaaaaa
gataataaagataagaaagcgggacttgaagatcaagctgaaagtgataaagcagcctta
agtcacgtaccttgcagattctttaaggctggtgcttgtactgccggtgatagttgccct
ttctcccacgcggctcctgacgccgcaaagcgagaagtatgtcaatggtttttgaaggga
aattgtaaattcggtcataaatgtgctctcgctcatgtgcgacctggagaacccatgtcg
atggatagaaagaacaagaaagctgcgcagctggaagctagagaaagaggtgattctgtt
agcgcttcggctcctcctcctgctccttcctccggagctggcacaggtaacaccagcggt
ctaggagaatcacctcgaccattaggtatcacgcgaggcaggaagaatagtacctcacct
ggagaagaccagatcgcttcgcctgtacctatcaagtctgctttatcctcctcgatgcag
tcacctcaagccggaagattaccttcatctccactcagagaaccattcgggccaccttca
ggtgccttgcccaattcgcccaattccgccggattcgctcaaccaagaggtatacaagga
tttgcttcttcgcctagtcgaccatcgcctttatcaggttcgttcggagcaagcggctca
gtacctggaccactgtcccttagggccagcgcatctaaccctcttggatctccattaaga
ccacctgtcacgactgcgccagggttctcttcttccttttctcacccttcattatcgctt
gaccgtcacggtcattcagccgcgccctctgttcccctttccgcatcttttgccggtgac
gctaatttacataagtcaatttgggcaagatcagatacgccagaagaacctctttcacct
agaagaagacctattcctagacctaccaagtcaaatcaagatgcagtatttatagatgat
gaagatcacggtgaagatttcttaccttcttctttgtccgatcttttaacccctcaagaa
agggctaggagaatgtcacgaagagattctcaaggtcaagaagattttgctcaatctcca
agtggaaggtacggtagtccactttggaatcaaggtttcgcaagtggcggtgagagatta
gctcaatctgctggtccagctcttggtccaggtgtaggaggttttttaaattccctttgg
tctgcagatggtgaagatgcaagaaaatctcaaaatccagatgaatttgaagtagaatca
ccaaatactcatacaaatcaagaaagtcaaaatggattcgcatttggacctacaacagct
aaacaacctcctaaaagacaaacttctctattaactcaacaaagatcacctacttcagga
tcttcttcaattacttctccaacttctccaaatagacaaattcatatgactgaaccttat
ttgattcgaaatttagattcatcttctccttcagctactaaagttcttgaatctcactta
ccaggtcaaagtttaccaggaggtttagcaagtgctttatcaagattacatatgcaaaat
tccaataattcaaaaaatcaacattctggtttatcaattgttaatggtcaaaataatgaa
gaggaaacgaatttgcaagttattgctaagaaaggtcatacagaagaagatgaagatgat
ggtttattcgatatggacggttaa
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