Kwoniella pini: 30172645
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Entry
30172645 CDS
T10980
Symbol
I206_104149
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
kpin Kwoniella pini
Pathway
kpin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kpin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
30172645 (I206_104149)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpin03021
]
30172645 (I206_104149)
03019 Messenger RNA biogenesis [BR:
kpin03019
]
30172645 (I206_104149)
Transcription machinery [BR:
kpin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
30172645 (I206_104149)
Messenger RNA biogenesis [BR:
kpin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
30172645 (I206_104149)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
DUF7340
zf_UBZ
Pre_tape_measure
zf-C2H2_4
zf-C2H2_11
zf-H2C2_2
Motif
Other DBs
NCBI-GeneID:
30172645
NCBI-ProteinID:
XP_019010971
UniProt:
A0A1B9I2H8
LinkDB
All DBs
Position
5:join(1005687..1005944,1006181..1007157,1007242..1007416,1007483..1007746,1007843..1008349)
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AA seq
726 aa
AA seq
DB search
MSYQAYPPYQQQIPQQGGQGSYYPPSHVVPPHDPFRAYYSDRLRQLTFNSRPIIQDLSMM
AGAQRDQNNWEGMNMIVQEIEEATLRALPTQKLPLLYLIDSISKNIGPPYTTHLLPPIIP
RLYLRTYREVDGVTKAKMEEMINLWRSGGPNRTELYPNGVREQIERDIFGSSYSSSSNGN
GNGVGIINNFPTLQQVKQTVQNALDKKQREAASKAWDLPTGQQVNALTGILNLLNSTNVS
PQELNQIMEQVKSIDLTLQSTSVNPIRQPVFSPQPPPSAHLSTPNWNQPPPVTPVSQNPS
ITPFQRQPIPQSVNVRPPFISAPTPQANLNTPIPGSTTPVPVPSVPIPTITNLPIDVSKI
LNSLNKSGIVSQNRTPEPEPQVKVTVEKSPLEVYEDYIINLNLSLRNIDLNAPNKLSFNH
LPHRCKQCGMRFASDGPKFQAHMDWHFRRNRKERESVGRGSHRRWLVRSYEWINDTYTSN
AEAGPSNTVNSPGKSNTSLKGTISLERMNQLKEKWVKVPQDTKKASSICPVCKEAFVKEW
SEDEEEWIWKNALNINGTYYHATCRAEQLSAMRRLKGSDPNKRSTSGSPRLTTTPQPPDV
TAQTQNPLSMQIKNENLEVPSSTTASPQSQKRKAEEDDLENGNKVEDGLESKRVKVELES
QTTEVVENDLQGNQDISPIIKEERIEEHISGNDEQVDENGSLETQADTQQTDNSEIENVV
LETTDV
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatcaagcttatccaccttatcaacaacaaatacctcaacaaggagggcaagga
tcttattatccaccaagtcatgttgttcctcctcatgatccatttcgagcttattattca
gatcgattgagacaacttacatttaattctcgtcctataattcaagatttatcaatgatg
gctggagctcaacgtgatcaaaataattgggaaggaatgaatatgattgtgcaagaaatt
gaagaggcaactttacgggcattaccaactcaaaaattaccgttattatatcttatcgat
tcaatttcgaaaaatattggtccaccatatactactcatcttttaccaccaattatacct
cgattatatttacgaacttatcgagaagttgatggagtaacaaaagctaaaatggaagaa
atgattaatttatggagatctggtggtccaaatagaacagaattatatcctaatggagta
agagaacaaattgaaagagatatttttggttcatcttattcttcttcttcaaatggaaat
ggaaatggtgttggtattattaataattttccaacgttacaacaagttaaacaaactgta
caaaatgcattagataaaaaacaacgtgaagcagcttcaaaagcatgggatttacctaca
ggtcaacaagtaaatgctctcacaggtattttaaatttacttaattctacaaatgtttca
cctcaagaattaaatcaaattatggaacaagttaaatctattgatttaacgttacaatca
acttcagtaaatcctatacgtcaacctgtatttagtcctcaacctcctccttcagctcat
ttaagtacaccaaattggaatcaaccaccacctgtcacgcctgttagtcaaaatccttca
ataacacctttccaaagacaacccataccacaatctgtgaatgttagaccaccattcata
tctgcacctacaccacaagcaaatttgaatactcctattccaggttcgacgacacctgtt
cctgttccatcggtacctataccaactattaccaatctacctattgatgtaagtaaaata
ttgaatagtttgaataaatctggtatagtaagtcaaaatagaactccagaacctgaaccc
caggtgaaagtgacagttgagaaatcacccttggaagtatatgaggattatatcatcaat
ctaaatctatcgttgagaaacatcgatttaaatgctccaaataaattatcattcaatcat
ttaccacataggtgtaaacagtgcggaatgagattcgcttctgatggaccaaaatttcaa
gctcatatggattggcattttagaagaaatagaaaagaaagagaatcagtcggacgagga
tctcatagaagatggttagtaagaagctatgaatggatcaacgatacttatacatcaaat
gcagaagctggaccatcaaatacagtaaattcacctggaaaatcaaatacttcgttgaaa
ggtactatttcattagaaagaatgaatcaacttaaagagaaatgggtaaaagtacctcaa
gatactaaaaaagcttcttcaatttgtccagtatgtaaagaggctttcgttaaagaatgg
tcagaagatgaagaagaatggatttggaaaaatgctttgaatattaatggaacttattac
catgcaacttgtagagcagaacaactttcagctatgcgtagattaaagggatctgatcct
aataaaagatcaacttctggaagtccaagattgactactactccacaaccacccgatgtc
acagctcaaactcaaaatcctttgtcaatgcaaattaaaaatgaaaatctggaagtacct
tcatcaacaactgcatctccgcaaagtcaaaaaaggaaagctgaagaagatgatttagaa
aatggcaataaggttgaagatggattggaaagtaagagagtaaaagttgaacttgagtct
caaactactgaagtggtagaaaatgatttacaaggaaatcaagatatttcaccgataatc
aaggaggaaaggattgaagaacacatttctggaaatgatgaacaagttgatgagaatggt
agtcttgaaacacaagctgatactcagcagactgataattccgaaatcgagaatgttgtt
cttgagacgacagatgtgtag
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