KEGG   Kwoniella pini: 30172985
Entry
30172985          CDS       T10980                                 
Symbol
I206_105796
Name
(RefSeq) uncharacterized protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
kpin  Kwoniella pini
Pathway
kpin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kpin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    30172985 (I206_105796)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kpin03019]
    30172985 (I206_105796)
Enzymes [BR:kpin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     30172985 (I206_105796)
Messenger RNA biogenesis [BR:kpin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     30172985 (I206_105796)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     30172985 (I206_105796)
SSDB
Motif
Pfam: DSHCT DEAD Ski2_N MTR4_beta-barrel MTR4-like_stalk ResIII Helicase_C DEXQc_Suv3 HTH_Tnp_ISL3
Other DBs
NCBI-GeneID: 30172985
NCBI-ProteinID: XP_070059294
UniProt: A0AAJ8LA24
LinkDB
Position
8:join(120463..120686,120749..121098,121176..121369,121439..121534,121591..121623,121674..121819,121875..122007,122072..122176,122231..122337,122400..122998,123058..123153,123218..123285,123351..123713,123790..123975,124062..124191,124261..124391,124449..124676,124737..125204,125306..125474,125555..125592)
AA seq 1287 aa
MALEQDELLAHEAFLELLNTAANPTSNTALSSDDLASALGIDKPLSKEDAINLLEKEILA
PVHDLSGEELWRWQVQPTVELPIPALTLKPLHQTHTVTPSYRGIDGTFTHWRESLAPKPP
AHPALSSSTTRAPGSLQNFVRGKGSYSPFLPGGLEAAATPEENDEQEEPEEEEEGWKTRA
PGLRRGIQLEGADDFLAEMLGQASIAPKAKRRRKEGEFESQLTVSRLGDEEEIEEISTNG
HAGPSSKNVDDLLPIGRLPAPPPPRRQFKAAMHKEWAHVVDVNQRLVNFNELVPEMAREY
PFELDNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSN
QKFRDFKTTFEPSSVGILTGDVQINAEGSCLIMTTEILRSMLYKGADLIRDVEFVIFDEV
HYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDIYVISTPMRPV
PLEHFLWAGKDIHKIVDSKSHFLGEGYKAAQEATRRKQDKEREANGLPPVQRTGGRGGAP
TKARDLPTGKNAPFTKTGAGRTHTNRAGGNGAPASAVARGGAGGGRGRGGFGGRASHQLD
QNIWTHLINFLKKNTLLPVVNFVFSKKRCEEYAQNLGPMDLNNAKEKSEVHLTWERALTR
LKGSDKTLPQILRMRDLLSRGIGVHHGGLLPLVKEVVELLFSRGLVKVLFATETFAMGVN
MPAKCVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTTGTVILLSGEELPSVTELN
EMMLGTPNRLSSQFRLTYNMILNLLRVEALKVEEMIKRSFSENATQKMAPEQQRQIAHAE
KQLARLPNVDCSICKVDIDAFYQLSAEIVRINQNIFKQASYAQNSGKLFVPGRVVILRNG
HLPGNLAILLRSATSLTTDGIKSDAKAWRMLVLVTPGQRSRKEDVNEIDVPPRYPPVLPK
GSFPTPQWEIATYDTTSLSFVANQILKVDHSGIIDKSSKEARDKALHDLTILHEELSSLP
ELPEVDWSRIRAVEFVDAIKQRAMLTDRLRKLGCQLCEDFQDHYTILHERKIVESSLISL
KLKLSDQNLELLPDYESRIQVLKSLSFIDENSTVLLKGRVACEINSAPELILTELILENI
LNEFEPEEVVALLSIFVFVEKSDSKPIINEKIEKGLNIIYKIANEIEIIQDKCKVQYDQF
DEKYKIGLVEVVYEWAKGMPFNQITELTDIPEGTIVRVITRLDETCREIRDAARVIGDAD
LFQKMEAAQALIKRDIVFAASLVSLNL
NT seq 3864 nt   +upstreamnt  +downstreamnt
atggctctggaacaagatgagcttcttgctcatgaagcgttcctggaactgctgaacaca
gctgccaatccgacatcaaatacggctctttcaagtgatgatttagcttcagcattgggt
atcgacaagccattaagcaaagaagatgcgataaacttacttgagaaagaaatcttggct
cctgtacatgatttgagtggagaggaattgtggaggtggcaagtacaacctaccgtggaa
ttaccaattccagctctaactcttaaaccactccatcaaactcataccgttacaccttca
tacagaggtatagatggtacttttactcattggcgagaaagtttagcgccaaagccgcct
gcacatccggcattatcatcttcaacaacaagagcacctggatctctacaaaatttcgtt
aggggaaagggaagttattcaccttttttaccgggtggtcttgaagctgctgctacacct
gaagagaatgatgaacaagaagagccggaagaagaggaagaagggtggaaaaccagggca
ccgggattgagaaggggtatacaacttgaaggcgcggatgatttcttggctgaaatgtta
gggcaagcttccatagcgcctaaagctaaacggaggcgaaaagagggagaattcgaatcg
cagttgaccgtatccagattaggcgatgaagaggaaatagaagaaatcagtacgaacggt
catgctggaccaagtagtaagaacgtggacgatttgcttcccatcggacgattacctgct
ccgcctcctccgagaagacagttcaaggctgctatgcacaaggaatgggctcatgttgtc
gatgtgaaccaacggctggtcaactttaatgagcttgtaccagaaatggcaagagaatac
cccttcgagcttgataatttccaaaaagaagctgtatacaggctggagatgggagacagt
gtgttcgtagctgcacatacatctgcgggtaaaacggtagtagcggaatatgcgattgcc
cttgcagcgaagcacatgacaaaagcaatttatacttcacctattaaagctctttccaat
caaaaattcagagatttcaagacaacttttgaaccttctagtgtaggtattttaacgggt
gacgtgcagatcaacgcagaaggtagttgtttgattatgacaacggaaattttacgaagt
atgctgtacaagggagctgatttgataagggatgtcgaatttgtgatattcgatgaggtc
cactatgtcaatgatgccgagcgaggtgtcgtatgggaagaagtgatcattatgttgcca
gaacatgtcaatataatactgctctctgcgactgtaccgaataccaaggaatttgcagat
tgggtagggcgtaccaagaagaaggatatctacgtcatctctacaccaatgcgaccggta
ccattggaacatttcttatgggccggaaaagatatacataagatcgtcgatagtaaatcg
catttcttaggtgaaggttataaagcagctcaagaggctactagacgaaaacaggataaa
gaaagagaagctaacggtctaccgcctgtacaaaggacgggcggacgaggcggagcacca
accaaagcaagagatttacctacaggcaagaatgcaccatttacgaaaactggagctgga
cgtacgcatacgaatagagcaggtgggaatggtgcacctgcctctgctgtggcacgtggt
ggagccggaggaggaagaggaagaggtggatttggtggtagagcaagtcatcagcttgat
cagaatatttggacacatctcatcaatttcctcaaaaagaatacacttttaccagtcgtc
aatttcgtgtttagtaagaagcggtgtgaagaatatgctcagaatctaggcccgatggat
ctgaacaacgcgaaagagaaaagtgaagtacaccttacatgggagagagctttgacgagg
ttaaagggatccgataaaaccctgcctcagatattgagaatgcgtgacttgcttagcaga
ggtatcggtgtacaccatggtggacttttaccgcttgttaaagaggtggttgagttgttg
ttctcccgaggcctggtcaaagttctcttcgccactgagacattcgcaatgggagtcaat
atgcctgctaaatgtgttgtgttctccggaattcgaaaacacgatggaacgtctttccga
aatttattacctggtgaatatactcaaatggcaggaagagcaggtcgaagaggtttagat
acaactggaacagttattttactcagtggagaagaattaccttcagtgacagaattgaac
gaaatgatgcttggtacacctaatcgattatcttctcaatttagattaacctataatatg
atcttgaatttgcttagagttgaagctttgaaagttgaagagatgattaagaggagtttc
tcagagaatgctactcaaaagatggcacctgaacaacaaagacaaattgctcatgcggag
aagcaacttgctcgattacccaatgtagattgctcaatttgtaaagtcgatattgacgcg
ttctaccaactttccgccgagattgttcgaataaaccaaaatatattcaaacaagcttct
tacgctcaaaatagtggaaaattgttcgtacccggacgagtggtgattttgcgtaacggg
catttgcctggaaatttagcaatactacttcgaagtgctacaagcttgaccactgacggt
ataaaatccgacgctaaggcttggagaatgttagttctcgttacgccagggcagagatcg
aggaaagaagatgtgaatgagatcgacgtcccccctcgatacccaccagttttgcctaag
ggttcattcccgacacctcaatgggagatagccacttacgacacaaccagcctgtcgttc
gttgctaatcagatactcaaggtcgaccattccggcattatagataaaagcagcaaggaa
gcaagggacaaagctttacatgatcttactattctgcacgaagagctatcttccttaccg
gaattaccggaagttgattggtcacgaattagagcagtcgaattcgttgatgcgatcaag
caaagggctatgttaactgatagattgagaaaattgggttgtcaattatgtgaagatttc
caagatcattatacaatattacatgaaagaaaaattgtagaatcttctttaatttcatta
aaattaaaactttcagatcaaaatttagaattattaccagattatgaatcaagaattcaa
gttttaaaatcattatcatttattgatgaaaattcaacagttttattaaaaggaagagtt
gcatgtgaaattaatagtgcacctgaattaattttaacagaattaattttagaaaatatt
ttaaatgaatttgaacctgaagaagttgttgcattattatcaatttttgtttttgttgaa
aaatcagattcaaaaccaattataaatgaaaaaattgaaaaaggtttaaatattatttat
aaaattgcaaatgaaattgaaattattcaagataaatgtaaagtacaatatgatcaattt
gatgaaaaatataaaattggtttagtagaagttgtttatgaatgggcaaaaggaatgcca
tttaatcaaattacagaacttactgatatacctgaaggtacaattgtaagagttataaca
aggttagatgaaacttgtagagaaattagagatgcagctagagtaattggtgatgctgat
ttatttcaaaaaatggaagctgctcaagctttgattaaaagggatattgtcttcgctgct
agtttggtaagtttgaatctatga

DBGET integrated database retrieval system