Kwoniella pini: 30174143
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Entry
30174143 CDS
T10980
Symbol
I206_107446
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
kpin Kwoniella pini
Pathway
kpin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kpin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
30174143 (I206_107446)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpin03019
]
30174143 (I206_107446)
03041 Spliceosome [BR:
kpin03041
]
30174143 (I206_107446)
Messenger RNA biogenesis [BR:
kpin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
30174143 (I206_107446)
Spliceosome [BR:
kpin03041
]
Complex B
Other components
Prp19-related factors
30174143 (I206_107446)
Complex C
30174143 (I206_107446)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
30174143
NCBI-ProteinID:
XP_070059621
UniProt:
A0AAJ8MT48
LinkDB
All DBs
Position
11:complement(join(290080..290426,290509..291025,291085..291285,291338..291419,291474..292612,292677..293465))
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AA seq
1024 aa
AA seq
DB search
MAIDQSPITSLSSRFPLTFPIPTPLTHSHLISASDLATEEDLLHNPDNIRSWLSYIHQLK
ERIANNEPSKGDTPSPEEILLGPLSNHVAREGLQQLTMVYERALAIFPTSFKLWRSYYQT
RQSYVLGQLTNSAKTARNHHSKRGSGFKTNVRELLEAAEEANEWQGGLDGIIGYEEWKSL
ISTGERMIACLSHLPAPWLLHLSILFHPKCPPVFKRTYARRTFDRALRTLPPSLHGRVWG
LYLRWAEMIGGEAGERVWRRFLKVDPSLTERHIAYLLDSSPPRPLAASKYLLSLARRAAK
NLYSSLEGKSPYQLFVDFLELVEKYADDVGMDEEQTLELKETRRAIEEEITVPEEEAVPA
EEPASIDGRLIRIAGPPVPVEQGKMYKPKDAVSKKGPEDLPYDEDTDPANSRLLDVEGIV
ERDGLEVYKDQAGRLWTGLATYWIKRGEFDRATVTFERGLAAVVTIRDFTQIFDAYAEFS
ETMISTLMDALADEDNLEDEDFDLEETEKELDERMKKFEELMDRRPFILNEVLLRRNPNE
VVEWEKRVALFGDDDEKVVETYIKALDTINPRKATGPLYPLYVNFAKFYEEGGSKDEEGE
PKNEPDLKQARKIMERATKVPFKSVDELAEVWCEWAELELRNENYDEAIRLMQRATTIPR
DPKKVNFYDESLSPQQRLFKSLKIWSFYSDLEESIGSVESTKVVYDKIMELKIANAQVIV
NYAGFLEENKYFEESFKVYERGIELFHPSVAFEIWNIYLSKFVKRYGGKKLERARDLFEQ
ALENCPPKFCKPIYLLYAKLEEEHGLAKRAMGIYDRACTTVQDSDKFDMFTIYIAKATAN
FGLPATRPIYERALESLPDKQTAEMCERFARMERKLGEIDRARAIYAHASQFCDPRVEGE
FWNEWNQFEVDTGSEDTFREMLRIKRAVQAAFNTETSFIAAQTAAAAKGVEKSIDNSGQD
AADPMAAMERDLPNTSTTTSKKIGGPAFVASTLKTQNSNGIDQADEGEEAVVNPDAIEMD
EDEF
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgaccaatcccccattacttccctttcctctcgttttcctctaactttcccc
attcctactcctcttactcactcgcatctcatctcagcatccgacttagcaaccgaggaa
gaccttctacacaatccggataatatcagatcatggctttcttacatacatcaattaaaa
gaacgaatagcaaataatgaaccttctaaaggagatacaccctcacctgaagaaatctta
ttaggtccattatcaaatcatgtagcaagagaaggtttacaacaattaactatggtttat
gaaagagctttagcaatttttccaacaagttttaaattatggagatcatattatcaaact
cgtcaatcatatgtacttggtcaattaacgaattctgcaaaaacagctagaaatcatcat
tcaaaaagaggatcaggatttaaaactaatgttagagaattattagaagctgctgaagaa
gctaatgaatggcaaggtggattagatggtataataggatatgaagaatggaaatcactt
atatctactggtgaaagaatgattgcttgtttaagtcatttacctgcaccatggttatta
cacctttcaattttatttcaccctaaatgtccaccagtttttaaaagaacttatgcaagg
aggacttttgatagagctttgagaactttacctccaagtttacatggaagagtttggggt
ttgtatcttagatgggctgagatgattggtggtgaagctggagagagagtttggaggcgg
tttttgaaggttgacccaagcttgactgaacgacatattgcctatctcctcgattcatcc
cctcctcgtccgctcgcagcttccaaatacctcttatccctcgcccgtcgtgctgctaag
aatttatactcttcgctcgagggcaaatcgccatatcagctattcgtcgacttcttagag
ctagtagaaaagtatgcagatgatgtcggtatggatgaggaacagacactagaattgaaa
gaaacgagacgagcaattgaagaagaaataacggtaccagaagaagaagctgtacctgct
gaagaaccagccagtatagatggacgtctgatcaggatagctgggccaccagtaccagtt
gaacaagggaaaatgtataaacctaaagatgcggtatcgaagaaaggaccggaagattta
ccatatgacgaagatacggatcctgcaaattctcgattgcttgatgttgaaggtatagta
gagcgagacggtttagaagtatacaaagatcaagctggtagattatggacaggattagct
acatactggatcaaacgaggagaatttgatagagcaacagtgactttcgaaaggggtttg
gcggctgttgtgactataagggatttcacccagatctttgatgcttatgctgaattctcg
gaaacgatgatatccactttgatggatgctttggcagatgaagataatttagaagatgag
gactttgatttggaagagactgaaaaagaattagacgaacgaatgaagaagtttgaagaa
ttgatggatcgtcggccgttcatcctgaatgaagtcctcttacgacgtaatccgaatgaa
gtggttgaatgggagaagcgagtagcgttgttcggagatgatgatgagaaagtagtggaa
acttatatcaaagcattagatactataaatccaagaaaggctactggacctctttatccg
ctttacgtgaactttgcgaagttttatgaagaaggtggaagtaaagacgaggaaggagaa
ccaaagaatgaaccggatttgaaacaggctaggaagataatggaacgtgcgactaaggta
cccttcaagagtgttgatgagttggccgaggtttggtgtgaatgggcagaattggaactt
agaaatgagaattatgacgaagctatacgtctaatgcaacgtgcaacaacgataccgcga
gatccaaagaaagttaatttctacgatgaatccctctcacctcaacaacgtttattcaag
tcacttaagatctggtcgttctacagtgatttggaagagtcaatcggttcggtggaatct
accaaagtcgtgtatgacaagatcatggaattgaaaattgcaaatgcccaagtcattgtc
aactatgctggattcttagaggaaaacaagtacttcgaagagagtttcaaggtgtatgaa
cgaggtatcgagcttttccacccttctgttgcattcgaaatttggaacatctacttatcg
aaattcgtcaaacgatatggcggaaagaaacttgaaagagctagagatctattcgaacaa
gctcttgagaattgcccacccaaattctgtaaaccgatatacctgctatatgcgaaactt
gaagaggaacatggattggccaaacgagcgatgggaatttacgatagagcatgtacgact
gttcaagattccgataaattcgatatgtttactatctacatcgccaaagcaacagccaac
ttcggattaccagctactcgaccgatttatgagcgtgctttggaaagtttacctgataag
caaactgccgaaatgtgtgagaggttcgcaaggatggagagaaaattgggtgaaattgat
agagcaagagctatttatgctcatgcaagtcaattttgtgatcctagagttgaaggtgaa
ttctggaatgaatggaatcaattcgaagttgatactggatcagaagatactttcagagag
atgcttagaatcaaaagagcagtccaagctgcatttaatactgaaacatctttcattgct
gctcaaacggcagcagcagccaaaggagttgaaaaatcaattgataattcaggtcaagat
gcagcagatcctatggcagctatggaacgtgatttacctaatacttcaacaacgacatct
aaaaaaattggtggacctgctttcgttgcttctacacttaaaactcaaaattctaatggt
atagatcaagctgatgaaggtgaagaagctgttgtaaatccagatgctattgagatggat
gaggatgagttttaa
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