KEGG   Kwoniella pini: 30174886
Entry
30174886          CDS       T10980                                 
Symbol
I206_101510
Name
(RefSeq) uncharacterized protein
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
kpin  Kwoniella pini
Pathway
kpin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kpin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    30174886 (I206_101510)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kpin03019]
    30174886 (I206_101510)
   03041 Spliceosome [BR:kpin03041]
    30174886 (I206_101510)
   03009 Ribosome biogenesis [BR:kpin03009]
    30174886 (I206_101510)
   03016 Transfer RNA biogenesis [BR:kpin03016]
    30174886 (I206_101510)
Enzymes [BR:kpin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     30174886 (I206_101510)
Messenger RNA biogenesis [BR:kpin03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     30174886 (I206_101510)
Spliceosome [BR:kpin03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    30174886 (I206_101510)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    30174886 (I206_101510)
Ribosome biogenesis [BR:kpin03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    30174886 (I206_101510)
Transfer RNA biogenesis [BR:kpin03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    30174886 (I206_101510)
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C ResIII nSTAND3 IstB_IS21
Other DBs
NCBI-GeneID: 30174886
NCBI-ProteinID: XP_019008833
UniProt: A0A1B9HWG3
LinkDB
Position
2:join(495457..495852,495914..496168,496230..496434,496508..496864,496937..497376,497443..497707,497780..498021,498086..498811,498893..499093,499182..499355)
AA seq 1086 aa
MASSNSNSKSVAGPSTPRSKKEKKRGVKERSVDTISDRPVKTAKIEEDIQEDETGQAGGD
AMDLLDSGAGPSNPKADAMEILEGQTEKGQDLEGVTVVKADEFSTEAEREIEASKGLDGA
ASDEGKMKLVHQVRHQVAVPPNYPYVPISEHKRNANPAREYKFTLDPFQYVSTSCIERNE
SVLVSAHTSAGKTVVAEFAIATCLREGKRIVYTSPIKALSNQKYREFLETFGDVGLMTGD
VTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPH
TVRYVFLSATIPNSMEFAEWITKTHEQPCHVVYTDFRPTPLQHYLFPAGSEGIYLVVDER
SNFREDNFQKAMAALAAGQGEDSADPNSGKGRKGNKTRKGGAMKGEKSDIYKIVTLIMRR
NLNPVIIFAFSKRECEDLAMQMQKFDFNSPDEAAMVQQVFENAISGLSEDDKKLSQIEGI
LPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKF
DGKDFRNLSGGEYIQMSGRAGRRGLDARGIVIMMCDEKIEPDAAKGMVKGQADRLDSAFH
LGYNMIINLMRVEGVSPEYMLERCFFQFQNSMSVPVLEKQLKEAEAARDEIVVEKEDEIS
EYYDLRQQLKEKGQDFQAVISHPSYSLKFLQAGRLVEIKDEDKDFGWCVVVAYNKVVNPK
GRTPIFTESDPAQKQYVVDVLTRVASGTSSNPKDRSSSALIPPSGNDQGEVAVIACSLTT
VQAISQYRINLPKDLRGQSERNTAFKAVNEIKKRMKDGPPLLDPIKSMGIEDKGFKDLVK
KIGILEQRLTSLPITSSSSLPRIYDLYDQKQQSIENVKSLKRKINSVHDVLQLEELKSRK
RVLRRLGFTTSDDVVEMKGRVACEISTGDELMLTEMMFGGTFGELTPEQCAALLSCFVFQ
EKSEAKVRLKEELAAPLRVLQETARRIAKISNESGIPIVEDEYVQSFKVEMMDAVLQWCK
GAKFSEICNLTDIFEGSIIRCFRRLQELIRQMGQAAHAIGNTELEEKFGKSMELLERPNT
VVFNPS
NT seq 3261 nt   +upstreamnt  +downstreamnt
atggcttcaagtaatagcaatagtaaatctgttgctggaccatctacacctcgatctaaa
aaagaaaagaagaggggtgtgaaagaaagaagtgttgatacgatatccgatcgaccggtt
aaaacagccaagatcgaagaagatatacaagaagatgaaactggtcaagctggtggagat
gctatggatctattagattctggtgctggaccttcaaatcccaaagctgatgccatggaa
atactagagggccaaactgagaagggacaagatttggaaggtgtaactgtcgtcaaagct
gatgagttttcaaccgaggctgaaagggagattgaggcttcgaaaggtcttgatggtgct
gcatcagatgaaggaaagatgaagcttgtccatcaagttcgacatcaagtagctgttcct
cctaattacccatacgttcctatttccgagcacaaacgaaatgccaaccctgcccgagaa
tacaaattcaccttagacccttttcaatatgtctctacatcgtgtatagaaagaaatgaa
tctgtcttagtatcagcacacacttcagcaggtaaaactgttgtagctgaatttgctatc
gctacatgtcttagagaaggtaaacgaatagtatatacctctccaataaaagcattgtcg
aatcaaaaataccgagaattcttagaaacttttggcgatgttggacttatgactggagat
gttacgataaatcctacggcatcatgcttggtcatgacgacggagattctaagatcaatg
ttgtatagaggatcagaagtcatgagagaagtagcttgggtcgtctttgacgaggtccat
tacatgagagataaagagcgaggtgttgtctgggaagaaactatcattcttcttccacac
accgttcgatacgtctttctttcagctaccattcccaattctatggagtttgcagaatgg
ataacgaaaacacacgaacaaccatgtcatgtagtttatacagatttccgtccgactcca
ttacagcattatcttttccctgctggatcagagggtatatatttggttgttgacgaaagg
agtaatttcagagaagataacttccaaaaagccatggctgcccttgcagctggacaagga
gaggattccgctgatccaaatagcggaaaaggtagaaagggcaacaagacgagaaaagga
ggagctatgaaaggagagaaatcggacatctacaagatcgttacactgatcatgaggcgg
aacttgaatccggtcattatattcgccttttctaagagggaatgtgaagatttagcaatg
caaatgcagaaattcgatttcaactctcctgacgaagctgcaatggtccaacaagtgttc
gaaaatgctattagtggtttatccgaagatgataagaagttatcacaaatagaaggtatc
ttaccattactcaaaagaggtataggaattcatcatggtggtcttttaccaattttgaaa
gaagttatcgaaattttgtttcaagaaggattgattaaagctctttttgctactgagact
ttttctattgggttgaacatgccggcgaaaactgtagttttcactagtgttaggaaattt
gacggtaaagatttcagaaatctaagtggtggtgaatatatacaaatgtcaggacgagct
ggacgaagaggattagatgctaggggaatagttatcatgatgtgtgatgagaaaattgaa
cccgatgctgctaaagggatggtaaaaggccaagcggatagattggattcagctttccac
ttgggttataatatgatcatcaatttgatgagagttgaaggggtcagtccggaatatatg
cttgaaaggtgtttcttccaattccaaaatagtatgagcgtgcctgtgttggagaagcaa
ctgaaagaggcggaagctgctcgagatgagatagtagttgaaaaagaagatgaaatatca
gagtattacgatttgcgacaacagctcaaggagaaaggtcaagatttccaggctgtcatc
tcgcatccttcttacagtcttaaattcttacaagctggtagattggtagaaataaaagat
gaggacaaagactttggatggtgtgtggtcgtagcgtataacaaggtcgttaatcccaag
ggccgaacaccgatctttacggagtctgatcctgctcaaaaacaatatgtcgttgacgtg
ctcacaagagtcgcttctggaacatcatcgaatcctaaagaccgatcctcgtctgcattg
atacctccttctgggaacgatcaaggtgaagtagctgttatagcttgctcccttactaca
gtccaagctatctctcaatatcgaatcaatttacccaaagatcttagaggtcaatcggaa
agaaacacagcatttaaagctgtaaatgaaattaagaagcgtatgaaagatggtccaccc
cttttggatcctataaaaagtatgggtatagaagataaaggattcaaagatttggtcaag
aaaattggtatattagaacaaagattaacatcgcttcctatcacttcttcctcttcctta
ccgagaatatatgatttgtatgatcaaaaacaacaatccatcgaaaatgttaaatcgctc
aaaaggaaaattaattcggtacatgatgttttacaattagaagaattgaaatcgcgtaaa
agagtattgagaagattaggatttaccacttcagatgacgttgtagagatgaaaggaaga
gtagcttgtgaaatatctacaggagatgagttaatgttgactgaaatgatgtttggtggt
acttttggtgaattaactcctgaacaatgtgcggctttattaagttgttttgtcttccaa
gagaagtctgaagcgaaagtacgattgaaagaagaacttgcagcaccattaagagtttta
caagaaacagctagacgtatagctaaaatatcaaatgaatctggtataccaattgtagaa
gatgaatatgttcaaagttttaaagttgaaatgatggatgcagttttacaatggtgtaaa
ggtgctaaatttagtgaaatttgtaatttaactgatatttttgaaggatcaattataaga
tgttttagaagattacaagaattgattagacaaatgggtcaagctgcacatgcaattgga
aatactgaattagaagaaaaatttggtaaatcaatggaattacttgaaagacctaataca
gtagtatttaatccttcgtaa

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