Kwoniella pini: 30175526
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Entry
30175526 CDS
T10980
Symbol
I206_106355
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
kpin Kwoniella pini
Pathway
kpin03013
Nucleocytoplasmic transport
kpin03015
mRNA surveillance pathway
kpin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kpin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
30175526 (I206_106355)
09122 Translation
03013 Nucleocytoplasmic transport
30175526 (I206_106355)
03015 mRNA surveillance pathway
30175526 (I206_106355)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpin03019
]
30175526 (I206_106355)
03041 Spliceosome [BR:
kpin03041
]
30175526 (I206_106355)
Enzymes [BR:
kpin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
30175526 (I206_106355)
Messenger RNA biogenesis [BR:
kpin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
30175526 (I206_106355)
Spliceosome [BR:
kpin03041
]
Complex C
Other components
EJC/TREX
30175526 (I206_106355)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
30175526 (I206_106355)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CMS1
DNA_ligase_A_N
Ned1_M
Motif
Other DBs
NCBI-GeneID:
30175526
NCBI-ProteinID:
XP_019007989
UniProt:
A0A1B9HU34
LinkDB
All DBs
Position
9:join(167668..167813,167887..167954,168016..168124,168189..168490,168970..169088,169150..169281,169342..169451,169520..169701,169774..169895)
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AA seq
429 aa
AA seq
DB search
MSRPDEEELVDYDEAAEETFAPAATATNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRA
ISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLACLQQIEPVDGEVGIVIL
CHTRELAYQIRNEFARFSKFMTNVRTGVFYGGTPISADQEILASKEKCPHIVVGTPGRTM
ALVRDKKLNASKVKHFVLDECDKMLETLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRT
TCKKFMQSPLEIYVDDETKLTLHGLQQYFLKLEEKEKNRKLNDLLDNLEFNQVCIFVKSV
ARATQLDALLQECNFPSICIHSALPQQERISRFQQFKAFEKRILVATDIFGRGIDVERVN
VVINYDAPTDADSYLHRVGRAGRFGTKGLAISFVSSDGDSEVLQKIQERFTVAIPTLPET
IDPATYMTS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacctgatgaagaagaactcgttgattacgatgaggctgccgaggaaactttc
gccccagctgctacagccactaatggtgataaagcagatggtgacaagaaaggttcatac
gttggtatccactcaaccggtttcagagatttccttttgaaacctgaattgctccgagct
atctctgatctcggttttgagcacccttcggaagtgcaacaagagtgtatcccacaagca
atcctcggaactgatgtattatgtcaagctaaatccggtatgggtaagaccgctgtgttc
gtcttagcatgtttacaacagatcgaacctgtagacggagaagtaggaattgtgatcctt
tgtcacacaagagaattagcttatcagatccgaaatgagtttgctcgattctcaaaattc
atgacaaacgtcagaactggtgtattctatggtggaacacctatttcagccgatcaagag
atccttgcttcaaaggagaaatgccctcacattgttgtcggtactccaggtcgaacaatg
gctttagttagagacaagaagctcaacgcaagtaaagtcaaacacttcgttttggatgaa
tgtgataaaatgttagaaactcttgacatgcgaagagatgtacaagaaatcttccgagcc
actcctcaccacaaacaagttatgatgttctccgccaccctttcaaaggatatccgaacc
acctgcaagaagttcatgcaaagtcctctcgaaatctacgtcgatgatgagaccaaattg
actcttcacggtcttcaacaatacttccttaaactcgaggagaaagagaagaacagaaaa
ttgaacgatctactcgataacctcgaatttaaccaggtctgtatattcgtaaaatcagtt
gctcgagccactcaactcgatgccttattacaagaatgtaatttcccatcgatctgtatt
cactctgctttacctcaacaagaacgtatttctcgattccaacaattcaaggcattcgaa
aaacgtatccttgttgctactgatattttcggaagaggtattgatgtagaaagagtaaac
gtagttatcaattatgatgctcctacagatgccgattcttatttacacagagtaggtaga
gcaggtagattcggtacgaaaggtttagctatttcatttgtttcttctgatggagattca
gaagttttacaaaaaattcaagaaagattcacagttgctattccaactttacctgaaact
attgatcctgctacatacatgacttcttaa
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