Klebsiella variicola KP5-1: A593_07435
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Entry
A593_07435 CDS
T03368
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kpk
Klebsiella variicola KP5-1
Pathway
kpk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kpk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A593_07435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpk03021
]
A593_07435
Transcription machinery [BR:
kpk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A593_07435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
AIE00384
UniProt:
A0A087FVK7
LinkDB
All DBs
Position
1533422..1535263
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTATH
VGSELSQEEMDDDEDEDEDDDADDNSDDDNSIDPELAREKFAELRTQYELTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRSMMDRVRTQERIIMKLCVEQCKMPKK
NFITLFTGNETSETWFNAAVAMNKPWSEKLLEVKEDVQRGLQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcaccg
gatgccgatgatctgatgcttgccgaaaacaccgcggatgaagatgctgccgaagctgcc
gcgcaggtgctctccagcgtggaatccgaaatcggacgcacgaccgacccggtgcgcatg
tacatgcgtgaaatgggtaccgtagagctgctgacccgtgaaggcgaaatcgacatcgcc
aaacgcatcgaagatgggatcaaccaggtccagtgctccgttgccgaatacccggaagcg
atcacctacctgcttgagcagtacgaccgcgtcgaagcggaagaagcccgtctgtccgat
ctgatcaccggtttcgtcgatccgaacgccgaagaagacatggcgccgaccgccacgcac
gttggctccgagctgtctcaggaagagatggatgacgacgaagacgaagatgaagatgac
gacgccgacgacaacagcgatgacgacaacagcatcgacccagagctggcccgtgagaag
ttcgccgagctgcgtacccagtacgagctgacgcgcgacaccatcaaagccaaaggtcgt
agccatgccgccgcgcaggaagagatcctgaagctgtctgaagtcttcaagcagttccgc
ctggtgccgaagcagttcgattacctggtcaacagcatgcgcagcatgatggatcgcgtt
cgtactcaggaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaa
aacttcatcacgctgttcaccggcaacgaaaccagcgaaacctggttcaacgctgcggta
gcaatgaacaagccgtggtccgagaagctgctggaagtgaaagaagacgtgcagcgcggc
ctgcagaagctgcagcagatcgaagaagagaccggcctgaccatcgaacaggtgaaagac
atcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatggtg
gaagcgaacttgcgtctggttatctctatcgccaagaaatacaccaaccgtggtctgcag
ttcctcgatctgattcaggaaggcaacatcggtctgatgaaagcggttgataagttcgaa
taccgtcgcggctacaagttctcgacctacgctacctggtggatccgtcaggcgatcacc
cgctccatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatt
aacaagctcaaccgtatctcccgtcagatgctgcaggagatgggccgtgaaccgaccccg
gaagagctggctgagcgtatgctgatgccggaagacaaaatccgtaaggtgctgaagatc
gccaaagagcctatctccatggaaacgccgatcggcgacgatgaggattcgcatctgggg
gatttcatcgaggataccaccctcgagctgccgctggattccgcgaccaccgagagcctg
cgtgcggcaacgcacgacgtgctggccggccttaccgctcgtgaagcgaaagtcctgcgt
atgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacagttc
gacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgtcac
ccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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