Klebsiella variicola KP5-1: A593_19915
Help
Entry
A593_19915 CDS
T03368
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpk
Klebsiella variicola KP5-1
Pathway
kpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A593_19915 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpk03019
]
A593_19915 (rne)
03009 Ribosome biogenesis [BR:
kpk03009
]
A593_19915 (rne)
Enzymes [BR:
kpk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A593_19915 (rne)
Messenger RNA biogenesis [BR:
kpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A593_19915 (rne)
Ribosome biogenesis [BR:
kpk03009
]
Prokaryotic type
rRNA processing factors
A593_19915 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIE02685
LinkDB
All DBs
Position
complement(4177092..4180319)
Genome browser
AA seq
1075 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPA
PMLEEPVTAPAVAAAPVAAAAPAQPGLLSRFFSALKNIFSGTEEAKPVEVPVEKKAEEKP
ERQQERRKPRSNNRRDRNDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRR
NRREKQPQNVEARDARQTVGDDADKAKSRDEQQPRRERSRRRNDDKRQAQQEAKVQTREE
PEVQETEQEERVQTLPRRKPRQLSQKVRIESAVAEQTAEIAPETVVAEVAAPRSEPVKAE
LPAVVENVVEHDENGEPREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA
CASPEMASGKVWIRYPVVRPQDQQPEEIPVQDTSAIEAIEAVATPVAVVETVTAAPVTVE
PATMEPVTAEPVVVEPVVAAEPVIVDTPEIVEPAAVEPAPAVEAPQAIAPVTIDAEPVTV
EPEVVETAPVVEAPVETIVPATETVVEAPVTEAAPTAPAEPVKAETPVSKPVVVAGDRHA
TAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGHSATRKATAEPTRPQPVE
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacctagccttgaagccgcgtttgtcgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgct
aactacaatgcgcacggtcgtcctaatatcaaagacgtgctgcgtgaaggtcaggaagtt
atcgtgcagattgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatc
agcctggcaggcagctatctggtcctgatgccgaacaacccgcgcgcggggggaatttcc
cgccgtatcgagggcgacgaccgcactgaactgaaagaagcgctggcgagcctggagctt
ccggacggcatgggtcttatcgttcgcaccgctggcgtcggcaaatctgccgaagccctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttcctgatccaccaggaaagcaacgtgattgtccgcgcattccgcgat
tatctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgctcgagctggcg
cgccagcatatcgccgcactgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgaatcgcaaattgagtccgccttccag
cgtgaagtgcgcctgccttccggcgggtctatcgttatcgacagcaccgaagcgctgacc
gcgatcgatatcaactccgcccgcgccacccgcggcggcgatatcgaagagacagccttc
aataccaaccttgaagcggctgacgagattgcccgccagctgcgtctgcgcgacctcggc
ggcttgatcgttatcgacttcatcgatatgaccccggttcgccaccagcgtgcggtggaa
aaccgtctgcgtgaagccgttcgtcaggaccgcgcgcgcattcagattagccatatttcg
cgcttcggcctgctggagatgtctcgccagcgcctgagcccgtcgctgggcgaatccagc
catcacgtctgcccgcgctgctccggcaccggtaccgtgcgtgataacgaatcgctgtcg
ctctctattctgcgtctgattgaagaagaggcgctgaaagagaacaccaaagaagtccac
gccatcgttccggtaccgatcgcctcttatctgctgaacgaaaaacgtgccgcagtgagc
gcaatcgaatcccgtcagggcgatgtccgcgtcattatcgtgccaaacgacgagatgcag
acgccgcactactccgtcctgcgcgtgcgtaaaggtgaagagacctcaacgctgagctat
ctgctgccgaagctgcatgaagaagagatggcgctgcctggtgacgaggagccagcagaa
cgtaaacgtccggagcagcctgcgctggccgcctttgtgatgcctgacgccccgccggca
ccgatgctggaagagcctgtgactgcccctgcggtcgccgctgccccggtcgcggccgcc
gcgccggcccaaccgggactgctctcacgcttcttcagcgcgctgaaaaatatcttctct
ggcactgaagaagccaaaccggttgaagttccggtcgagaagaaagcggaagaaaaaccg
gagcgtcagcaggagcgccgtaaaccgcggagcaacaaccgccgcgatcgcaacgaccgc
aacgatcgccgtgataaccgcgacaatcgtgacaaccgcgataaccgtgacaatcgcgac
acccgtgcggacaatgccgagggtcgtgagccgcgcgaatcgcgtgaagaaaaccgtcgc
aatcgtcgcgaaaagcagccgcaaaacgtagaagcgcgtgacgctcgccagaccgtcggc
gatgacgcggacaaagccaaatcccgcgacgagcagcagccgcgccgcgaacgctcccgc
cgccgcaatgacgataaacgtcaggcgcagcaggaagccaaggtgcagacgcgtgaagag
ccggaagtacaggagactgagcaggaagagcgtgtgcagactctgccgcgtcgtaaaccg
cgtcagctctcccagaaagtacgcattgagtcagccgttgccgagcagactgccgagatc
gcgcctgagaccgttgtggctgaagtcgccgccccgcgcagcgagccggtgaaagccgaa
ctgccggcggtagtggaaaacgtagtggaacacgatgaaaacggcgaaccccgtgaagcg
aacggtatgccgcgccgctctcgtcgttccccgcgtcatctgcgcgtgagcggtcagcgt
cgtcgtcgctatcgtgacgaacgctatccgacccagtcgccgatgccgctgaccgtcgcc
tgcgcctcgccggagatggcttccggtaaagtctggatccgctacccggtcgttcgtccg
caggaccagcagccggaagagattccggttcaggacaccagcgccattgaagccattgag
gctgttgcgacaccggttgccgtggttgaaaccgtcactgccgcgccagttaccgtcgag
ccggcgaccatggagcccgttaccgctgagccggtggtcgtcgaacctgtcgtagccgcc
gagccggtgatcgttgatactccggaaattgtcgagccagccgctgtcgagccagcgcca
gctgtcgaagcgcctcaggctattgcgccagtgacgatcgacgccgagccggtcacagtt
gaacctgaagtggtggaaacggcgcctgtcgttgaagcgccagtggaaaccatcgttccg
gccacggaaaccgtggtggaggcaccggtgaccgaagccgcccctacggcccctgccgaa
ccggtcaaagctgaaacgccggtaagcaaacccgtggttgtggctggcgatcgccatgct
accgcgccgatgacccgggcgcctgctccggactatgtcccggaagcgccgcgccacagc
acctgggtgcgcccgccgttcgcttttgaaggtaaaggcgccgccggtggtcatagtgcg
acgcgtaaagccaccgcagaaccgacccgcccacagcccgtcgaataa
DBGET
integrated database retrieval system
