Kocuria palustris: KPaMU14_03610
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Entry
KPaMU14_03610 CDS
T04045
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kpl
Kocuria palustris
Pathway
kpl03420
Nucleotide excision repair
kpl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KPaMU14_03610
03430 Mismatch repair
KPaMU14_03610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpl03400
]
KPaMU14_03610
Enzymes [BR:
kpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KPaMU14_03610
DNA repair and recombination proteins [BR:
kpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPaMU14_03610
MMR (mismatch excision repair)
Other MMR factors
KPaMU14_03610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
TetR_C_20
Motif
Other DBs
NCBI-ProteinID:
ALB04239
LinkDB
All DBs
Position
811359..813188
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AA seq
609 aa
AA seq
DB search
MFALPETEQLPLEERILEGLDPEQREAATALRGPVCVLAGAGTGKTRAITHRIAYGIATG
VYTPQKVLALTFTARAAHEMRDRLRLLGAEGVQARTFHSAALRQLQYFWPQAVGGSIPDL
VTHKARLIAEAAGSMRLSSDRAAIRDLSGEIERARALLLVPDMYPDAIAREAAAGSVRDL
PGGHSATTIQRLWQTYEDLKTDRNLIDFEDVLAIMTGILEEDQRIAAAVRAQYQHFVVDE
YQDVSPLQQRLLDAWLGPRDDLCVVGDASQTIYSFTGATSRHLLEFPARYESARVIRLVR
DYRSTPQIVDTANRLLSARRAGPDSTEGLWAEPLRLVGQRAAGPVPDWHEYQDDQAEAQG
TAVRIQDLLQDGVPATEIAVLYRTNGQAQAFETALADAGIGFRLRGTEQFFRRPEVRQAM
VQIRSAARAEAESGTGAVAQQVRDMLRSLGWSQHAPRTVGSTREKWESMAALVDMTDRLA
AAHTESLQAAQRAGTEGPGPFTLRHVAEELGRRAVAQDAPPVEGVTLASLHSAKGLEWDA
VFLTGLSEGLMPITFAETSDEIDEERRLLYVGITRAREQLMLSCSASRTPGGRANRRPSR
FLKDLLLTR
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
ctgttcgcgctgccggagaccgagcagcttcctctcgaggagcgcatcctcgaaggcctg
gatcccgagcagcgcgaggccgccacggccctgcgcggaccggtgtgcgtgctggccggc
gcgggcaccggcaagacccgggccatcacccaccggatcgcctacgggatcgccacgggg
gtctacaccccccagaaggtcctggccctgaccttcacggcccgggccgcccacgagatg
cgcgatcgcctgcgtctgctgggcgcggagggcgtgcaggcccggacgttccactcggcg
gccctgcgccagctgcagtacttctggccccaggccgtcggcggctccatcccggacctg
gtcacgcacaaggcgcggctgatcgcggaggcggcgggctccatgcgcctgagcagcgac
cgcgcggcgatccgcgacctgtcgggggagatcgagcgcgcccgggcgctgctgctcgtg
ccggacatgtacccggatgccatcgcccgagaggccgcggccggttccgtccgggatctg
cccggcgggcacagcgccaccacgatccagcggctgtggcagacctacgaggatctcaag
accgaccggaacctgatcgacttcgaggacgtgctggccatcatgaccggcatcctcgag
gaggaccagcggatcgcggccgctgtgcgggcgcagtaccagcacttcgtggtcgacgag
taccaggatgtctcgccgctgcagcagcgcctcctggacgcctggctcggcccgcgcgac
gacctgtgcgtggtgggcgatgcctcccagaccatctactcgttcacgggcgccacgtct
cggcacctgctcgagttcccggcgcgctacgaatccgcccgggtgatccgcttggtgcgc
gactaccgctccaccccgcagatcgtggacacggccaatcgcctgctcagtgcgcgtcgt
gccggcccggattcgaccgaggggctgtgggccgagcccctgcgcctggtggggcagcgc
gccgccggtcccgtcccggactggcacgagtaccaggacgatcaggccgaggcccagggc
accgccgtgcgcatccaggacctgctccaggacggcgtcccggccaccgagatcgccgtg
ctctaccgcaccaatgggcaggcccaggccttcgagaccgcactggccgatgccggcatc
ggcttccggctgcgcggcaccgagcagttcttccgccgtccggaggtgcgccaggccatg
gtgcagatccgctccgcggcaagggccgaggcggagtccggaaccggcgccgtggcccag
caggtccgggacatgctgcgctcgctgggctggtcgcagcacgccccgcgcaccgtgggc
agcacgcgggagaagtgggagtccatggcggcgctggtggacatgacggaccgcctggcc
gccgcgcacaccgaatcactccaggccgctcagcgcgccgggacggagggccccggcccg
ttcaccctgcggcacgtggccgaggagctgggtcgtcgggccgtggcccaggacgcgccc
ccggtcgagggggtcaccctggcctccctgcactcggccaagggcctggagtgggacgcg
gtcttcctgacggggctgtcggaggggctcatgccgatcacgttcgccgagacctcggac
gagatcgacgaggagcgccgactgctctacgtcggcatcacccgtgcccgcgagcagctg
atgctctcgtgctcagcctcgcggaccccgggcggacgcgccaaccggcgcccgtcgcgc
tttctgaaggacctcctgctcacccgctga
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