Kocuria palustris: KPaMU14_05190
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Entry
KPaMU14_05190 CDS
T04045
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpl
Kocuria palustris
Pathway
kpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPaMU14_05190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpl03019
]
KPaMU14_05190
03009 Ribosome biogenesis [BR:
kpl03009
]
KPaMU14_05190
Enzymes [BR:
kpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KPaMU14_05190
Messenger RNA biogenesis [BR:
kpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPaMU14_05190
Ribosome biogenesis [BR:
kpl03009
]
Prokaryotic type
rRNA processing factors
KPaMU14_05190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
ALB03046
LinkDB
All DBs
Position
1164858..1168544
Genome browser
AA seq
1228 aa
AA seq
DB search
MASEQAQPESDSSPEGSNVPAENPSTDSADPSAQTEIDLGAAAQDTPTEPRETTAETASA
ETASAEPASTDPAPSADAGTEQAEAGGKKSLTDQTEQTESAQDEESQQEGERVETEGQAA
EQADPAQTAFEALESAEHTQEQASTTILRTAPLGGSEQTQEAQSQQQPAQQQPAQQEPPQ
QGKDEETKDEQPTADPFAAFGAASATSLLFHAPAPEDVAAARERAEREREEARLREVQEE
EQAEEAEYEDPEPGAGVTSRRRRRRRRGSEDLELIGGDDGDPEQTITRIRTARVVDGSAP
TTVQSVKGSTRLEAKKQRRRESRQTGRRRQVITEAEFLARRESVERTMVVRQKNDRIQIG
VLEDGILAEHFVSHTQQDSLIGSVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWDK
ASLNGAAKRIENALKPGDPVLVQATKDPVGHKGARLTSQISLPGRYLVFVPGGSMTGISR
KLPDVERQRLKKILKDHLPEGAGVIVRTAAEGASEEELTNDINRLRTQWEQIQEKAAQGK
TLAPELLYAEPDLTIKTVRDVFNEDFTAMHVQGQEAWDGIEAYVTYVAPDLLDRVHRWDG
DEDLFAHYRVDDQIFKALERKVMLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVT
KNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLEANRDLVLRRLVECLGRDRTKHQVAEVT
SLGLVQMTRKRMGTGLLEVFSEDCEACDGRGVVVHDHPLKGRSSGSSDNRQGRNDRKRSR
RLPGAQDEQRPRAEDPEQAKRAQATRSALAAIASASGHDTDSSASAGERTEAASASEPAG
DQESQGQRPQESQDSRESGKRRRKRRGKRSRGRGQDGQAPQDQDDQDRSDQAQSDRQDSP
QADPGQGQDTGAQAEQGRGESDGRSGQRRQRGERSSGRGGRGRSEAQSGTRSEDETRSLI
EARIRAASGEAPEASAPREDAADQSAPEKETDGEATPREASEPKRRDAAQGTQGRRERRS
RTARAESQEAAQGASQGEQAAAAQQKRRSRTAAAAQAAPEPVQAPAAPTAPAAPTAPAAQ
GTATVRDADAEQAAPVRQRARRSRRAAAPAGTPEVPQSAPAAPAASPTVTAGSASVVSTS
EGASQVTINGEVIELPQGQSAAEALGAGGSSGSQLESLASSLGEREPGAAGPRRRPRRSR
RASAPEAAPQAGPAQDGGDASQGEHERS
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagagcaggcacagcccgagtcggactcctcgccagagggctcgaacgtcccg
gcggagaacccctccaccgattccgctgacccgtcggcccagaccgagatcgacctgggc
gcagcggctcaggacacccccacggaaccccgggagaccaccgctgagacggcgtcggcg
gagacggcatccgctgagccggcctcgacggatcccgccccgtcggcggacgccgggacc
gagcaggccgaggccggcggcaagaagagcctgacagaccagaccgagcagacggagtcg
gcgcaggacgaggagtcccagcaggagggcgagcgcgtcgagaccgagggccaggccgcc
gagcaggcagatccggcgcagaccgccttcgaggcgctcgagtccgcagagcacacgcag
gagcaggccagcaccacgatcctgcgcaccgcgccgctgggcggcagcgagcagacccag
gaggcgcagagccagcagcagccggcccagcagcagccggcccagcaggagccgccgcag
cagggcaaggacgaggagaccaaggacgagcagccgacggcggatccgttcgccgcgttc
ggcgcggcgtcggccacgtcgctgctcttccacgccccggccccggaggacgtcgccgcg
gcacgggagcgcgccgagcgcgagcgcgaggaggctcgtctgcgcgaggtgcaggaggag
gagcaggccgaggaggccgagtacgaggacccggagcccggtgctggggtcacgagccga
cgtcggcgcaggcgccgtcgcggctcggaggatctggagctgatcggcggggacgacggc
gacccggagcagaccatcacgcgcatccgcaccgcgcgcgtggtcgacggctccgcgccc
accaccgtgcagtcggtcaagggctccacgcgcctggaggccaagaagcagcgtcgtcgc
gagtcgcgtcagaccgggcgccgccgccaggtgatcaccgaggcggagttcctggctcgt
cgggaatcggtcgagcggaccatggtggtgcggcagaagaacgaccgcatccagatcggc
gtgctcgaggacgggatcctcgcggagcacttcgtctcgcacacccagcaggactcgctg
atcggcagcgtctacctgggcaaggtccagaacgtgctgccgtccatggaggccgccttc
gtggacatcggccgcggccgcaacgccgtcctctacgccggcgaggtcgactgggacaag
gcgagcctcaacggtgcggccaagcgcatcgagaatgcgctgaagcccggagacccggtg
ctggtgcaggccaccaaggacccggtggggcacaagggcgcgcgcctgaccagccagatc
tccctgccggggcgctacctcgtgttcgtgcccggcggctcgatgaccggcatctcccgc
aagctgcccgacgtcgagcgccagcggctgaagaagatcctcaaggaccacctcccggag
ggtgcgggcgtcatcgtgcgcaccgccgccgagggggcttcggaggaggagctgaccaac
gacatcaaccgcctgcgcacccagtgggagcagatccaggagaaggcggcccagggcaag
acgcttgcgccggagctgctgtacgccgagccggatctgactatcaagaccgtgcgcgac
gtcttcaacgaggacttcaccgccatgcacgtccagggccaggaggcctgggacggcatc
gaggcctacgtgacctacgtggctcctgacctgctggaccgcgtccaccgctgggacggg
gacgaggatcttttcgcccactaccgggtggacgatcagatcttcaaggcactggagcgc
aaggtcatgctgccctcgggcggctccctggtgatcgaccgcaccgaggccatgaccgtc
gtcgacgtcaacacgggcaagttcaccggctccggcggcaatctcgaggagaccgtcacc
aagaacaacctcgaggcggccgaggagatcgtgcggcagctgcgcctgcgcgatatcggc
ggcatcgtggtcatcgacttcatcgacatggtgctcgaggccaaccgcgacctcgtgctg
cggcgcctggtcgagtgcctgggtcgcgaccgcaccaagcaccaggtcgccgaggtcacc
tcgctggggctcgtgcagatgacccgcaagcgcatgggcaccggcctgctcgaggtcttc
tcggaggactgcgaggcctgcgacggccgcggcgtggtcgtccacgatcacccgctcaag
ggccgcagctcgggctcctcggacaaccggcagggtcgcaacgaccgcaagcgcagccgt
cgtctcccgggcgctcaggacgagcagcgtccgcgcgccgaggatccggagcaggccaag
cgcgcacaggccacccgaagcgccctggccgcgatcgcctcggccagcggccacgacacc
gactcctccgcctcggcaggagagcggacggaggcagcctctgcgagcgagcccgccggg
gaccaggagtcccagggccagcgcccgcaggagtcccaggactcccgcgagagcggcaag
cgtcgtcgcaagcgccgcggcaagcgctcgcgcggccgcggtcaggacggccaggccccg
caggaccaggacgatcaggaccgcagcgaccaggcccagagcgaccggcaggactccccg
caggccgatccggggcagggccaggacaccggcgcccaggcagagcagggccgcggtgag
tcggacggccgctccgggcagcgccggcagcgcggtgagcgctcctccggccgtggcggc
cgcggccggtccgaggcgcagtccgggacccgctccgaggacgagacccgctccctgatc
gaggcgcgcatccgtgcggcctccggcgaggctcccgaggcgagcgccccgcgcgaggac
gcggcggatcagtcggccccggagaaggaaaccgacggcgaggccacgccgcgagaggca
tcggagccgaagcgccgggacgccgctcagggcacccagggacgacgtgagcggcgatcg
cgcacggcgcgagccgagtcgcaggaggcggcccagggtgcttcccagggcgagcaggcg
gctgccgctcagcagaagcgtcgcagccgcaccgcggccgctgcccaggcggcgccggag
ccggtccaggccccggccgcaccgacggccccggccgcaccgacggccccggccgctcag
ggcacggcgacggtgcgcgatgcggacgcggagcaggccgccccggtgcgccagcgggcg
cgtcgctcgcgtcgtgcggcggctccggcgggcacgcccgaggtcccgcagtcggctcct
gcggctcccgccgcctcgccgaccgtgaccgcaggcagcgcctcggtggtctcgacctcc
gagggagcctcgcaggtgacgatcaacggcgaggtcatcgagctgccgcagggccagagc
gccgccgaggcgctgggcgccgggggctcgtccggctcgcagctcgagtcgctggccagc
tcgctgggcgagcgcgagcccggtgccgccggtccgcgccgtcgcccgcgccgctcgcgc
cgcgccagcgccccggaggccgcaccccaggcgggtccggcgcaggatggcggggacgcc
tcgcagggtgagcacgagcgctcctga
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