Kocuria palustris: KPaMU14_08085
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Entry
KPaMU14_08085 CDS
T04045
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
kpl
Kocuria palustris
Pathway
kpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPaMU14_08085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpl03019
]
KPaMU14_08085
03016 Transfer RNA biogenesis [BR:
kpl03016
]
KPaMU14_08085
Enzymes [BR:
kpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KPaMU14_08085
Messenger RNA biogenesis [BR:
kpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KPaMU14_08085
Transfer RNA biogenesis [BR:
kpl03016
]
Prokaryotic type
tRNA degradation factors
KPaMU14_08085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
PCB_OB
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ALB03453
LinkDB
All DBs
Position
complement(1858538..1860799)
Genome browser
AA seq
753 aa
AA seq
DB search
MEGPEIQSAEAVIDNGRYGQRVVRFETGLLAQQAAGSTLVSIDDDTTLLSTTAVGKKPRE
GFDFFPLTVDVEERMYADGRIPGSFFRREGRPSTDAVLACRLIDRPLRPAFQKGIRNEVQ
VVVTVLAIDPDEIYNTIAINAASMSTTLSGLPFGGPVGGVRLALMAEADGTHQWVCFPKH
SQLENAVFDMAVAGRVVTKADGTEDVAIMMVEAEATDRSWELIKGQGAVAPTEEIVAEGL
DAAKPFIKALCQAQSDLKARAGKPEMELPRFGGHGDDVAQAVKDAVGQRLVEAYSIAGKQ
EREDATDALHQSVLEELTGEGKPFAERADEVNDAYQALTKHTVRQRVLSENVRIDGRGPR
DIRELTAMVEILPRVHGSAIFQRGETQIMGVTTLNMLKLEQQIDSLSPVKSKRYMHHYNF
PPYSTGETGRVGSPKRREIGHGALAERALAPVIPSREEFPYAIRQVSEALSSNGSTSMGS
VCASTLSLLNAGVPLRAPVAGIAMGLITGEVDGKPASVALTDILGAEDALGDMDFKVAGT
SEFVTAIQLDTKLDGIDAEVLGAALAQARDARLAILNVIASAIDAPDEMSEYAPRIITVN
VPVSKIGEVIGPKGKMINQIQEDTGADISIEDDGTVFIGAVDGPSAEAARSAINAIANPQ
VPEVGERYLGTVVKTTTFGAFVSLTPGRDGLLHVTELRKLNDGKRVNDVEDVVGVGQQVQ
VEITKVDDRGKLSLSPVVADDDAAEADEDSAAE
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ttggagggtcccgagatccagtccgccgaagccgtcatcgacaacggccgctacggccag
cgcgtcgtgcgcttcgagaccggtctgcttgcgcagcaggcagccggctccaccctggtg
tccatcgacgatgacaccaccctgctgtccaccaccgcggtgggcaagaagccccgcgag
ggcttcgacttcttcccgctgaccgtggacgtggaagagcgcatgtacgccgacggacgc
atccccggctcgttcttccgccgcgagggccgtccctcgaccgacgccgtgctggcctgc
cgcctgatcgaccgcccgctgcgccccgccttccagaagggcatccgcaacgaggtccag
gtcgtcgtgactgtgctggcgatcgaccccgacgagatctacaacaccatcgcgatcaac
gccgcgtcgatgtccacgaccctgtccggcctgcccttcggcggcccggtcggcggcgtg
cgcctggccctgatggccgaggccgacggcacccaccagtgggtctgcttccccaagcac
tcccagctcgagaacgccgtgttcgacatggccgtggccggccgcgtggtcaccaaggcc
gatggcaccgaggacgtcgcgatcatgatggtcgaggccgaagccaccgaccgctcgtgg
gagctcatcaagggccagggcgccgtggcgcccaccgaggagatcgtggccgagggcctc
gacgccgcaaagcccttcatcaaggccctgtgccaggcccagtcggacctcaaggcccgc
gccggcaagcccgagatggagctgccgcgcttcggcggccacggcgacgacgtcgcccag
gccgtcaaggacgccgtgggccagcgcctggtggaggcctattcgatcgccggcaagcag
gagcgcgaggacgccaccgacgccctgcaccagtccgtcctggaggagctgaccggtgag
ggcaagcccttcgccgagcgcgccgacgaggtcaacgacgcctaccaggccctgaccaag
cacaccgtgcgccagcgcgtgctctccgagaacgtgcgcatcgacggccgcggcccccgc
gacatccgcgagctgaccgccatggtggagatcctgccgcgcgtgcatggctcggcgatc
ttccagcgcggcgagacccagatcatgggcgtcaccacgctgaacatgctcaagctcgag
cagcagatcgactcgctgtcgccggtgaagtccaagcgctacatgcaccactacaacttc
ccgccgtactccaccggcgagaccggccgcgtgggctcgcccaagcgccgcgagatcggc
cacggcgctctggccgagcgcgcactggcccccgtgatcccgtcgcgcgaggagttcccc
tacgcgatccgccaggtctccgaggccctgagctccaacggctcgacctccatgggctcg
gtctgcgcctcgaccctgtcgctgctcaacgccggcgtgccgctgcgcgccccggtggcc
ggcattgccatgggcctgatcaccggcgaggtcgacggcaagccggccagcgtcgcgctg
accgacatcctgggcgcggaggacgcgctcggcgacatggacttcaaggtcgccggcacc
tccgagttcgtcacggccatccagctggacaccaagctcgacggcatcgacgccgaggtc
ctgggcgccgccctggctcaggcccgcgatgcccgcctggccatcctcaacgtgatcgca
tccgcgatcgatgcaccggacgagatgtccgagtacgccccgcggatcatcacggtcaac
gtgcccgtctccaagatcggcgaggtcatcggccccaagggcaagatgatcaaccagatc
caggaggacaccggcgcggacatctccatcgaggacgacggcaccgtgttcatcggcgcc
gtggacggcccctcggccgaggccgcgcgctcggctatcaacgcgatcgccaacccgcag
gtccccgaggtgggggagcgctacctgggcacggtcgtgaagaccacgaccttcggcgcc
ttcgtctcgctgaccccgggccgcgacggcctcctgcacgtcaccgagctgcgcaagctc
aacgacggcaagcgcgtcaacgacgtcgaggacgtcgtgggcgtgggccagcaggtccag
gtcgagatcaccaaggtcgatgaccgcggcaagctctcgctctcgccggtcgtggccgac
gacgacgccgctgaggcggacgaggactccgccgccgagtga
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