Kocuria palustris: KPaMU14_10170
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Entry
KPaMU14_10170 CDS
T04045
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kpl
Kocuria palustris
Pathway
kpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPaMU14_10170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpl03019
]
KPaMU14_10170
03009 Ribosome biogenesis [BR:
kpl03009
]
KPaMU14_10170
Enzymes [BR:
kpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KPaMU14_10170
Messenger RNA biogenesis [BR:
kpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KPaMU14_10170
Ribosome biogenesis [BR:
kpl03009
]
Prokaryotic type
rRNA helicases
KPaMU14_10170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
adh_short
HEM4
Motif
Other DBs
NCBI-ProteinID:
ALB03752
LinkDB
All DBs
Position
complement(2313009..2314838)
Genome browser
AA seq
609 aa
AA seq
DB search
MSENAPDQNTQDTTPTFAELGIDARVLAALEAIGYEKPSPIQEATIPVLLEGRDVVGMAQ
TGTGKTAAFAVPALSRLAELADLNGPSTSTQVLVLAPTRELALQVGEAFASYAVQLEDFT
VLPVYGGSSYGPQLAGLRRGAQVVVGTPGRVIDHLKRGSLKLDDLQYLVLDEADEMLRMG
FAEDVETILSQTPEDKQVALFSATMPPAIRKIAQRYLRNPEEISVKAKTSTATNIRQRYL
QVMGAHKLEAMTRLLEVEEHDGIIVFVRTKAATEEVAEKLRARGHAATAINGDIPQQARE
KSVEQLRSGKIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDA
ILFMTPREKYLLRAIEKTTRQPVEQMPMPSVEDVNRTRVDQFGQSITDTIETQDLSAFRE
MVTAYVEDHDVDPLEVAAALAVISQGDQPFFAQELPEPKRKERDRGERSERGGRTPRSEE
GKATYWMAVGHKHRALPGSIVGALTNEGGLKGSDIGAIEIKPSFTLIGLPDDLSRGDLDR
LGAIEINGQRLDIRQDRGPKSSGARSDRGDRGGYRGDDRRGGRSARPEHSGGHKKFTGGR
KGSQRHGSR
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaacgcccccgaccagaacacccaggacaccacccccaccttcgccgagctc
ggcatcgacgcccgcgtgctcgcagcgctcgaggccatcggctacgagaagccctcgccc
atccaggaggcgaccatcccggtcctgctggagggccgcgacgtcgtcggcatggcgcag
acgggcaccggcaagaccgcggccttcgcggtcccggccctgtcgcgcctggccgagctg
gccgatctcaacggcccgtcgacctccacgcaggtcctggtgctggcccccacccgcgaa
ctggcgctgcaggtcggcgaggccttcgcctcctacgccgtccagctcgaggacttcacc
gtcctgccggtctacggcggctcctcctacggtccgcagctggccgggctgcgccgcggc
gcccaggtggtcgtcggcacgccgggccgcgtgatcgatcacctcaagcgcggctccctg
aagctcgacgacctccagtacctcgtgctcgacgaggccgacgagatgctgcgcatgggc
ttcgccgaggacgtcgagacgatcctgtcgcagacccccgaggacaagcaggtcgccctg
ttctccgcgaccatgcccccggcgatccgcaagatcgcccagcgctacctgcgcaacccg
gaggagatctcggtcaaggccaagacctccaccgccacgaacatccgccagcgctacctg
caggtcatgggcgcccacaagctcgaggccatgacgcgcctgctcgaggtcgaggagcac
gacggcatcatcgtcttcgtgcgcaccaaggccgcgaccgaggaggtcgccgagaagctg
cgcgcccgcggccatgccgccaccgcgatcaacggcgacatcccgcagcaggcccgcgag
aagtccgtggagcagctgcgcagcggcaagatcgacatcctggtcgccaccgacgtcgcc
gcccgcggactggacgtggagcgcatctccctggtcgtgaactacgacatcccgcacgac
accgagtcctacgtccaccgcatcggccgcaccggccgcgcgggccgctcgggcgatgcg
atcctgttcatgaccccgcgcgagaagtacctgctgcgcgcgatcgagaagaccacgcgc
cagccggtcgagcagatgcccatgccctcggtcgaggacgtgaaccgcactcgcgtcgat
cagttcgggcagtcgatcacggacacgatcgagacccaggatctctcggccttccgcgag
atggtcaccgcctacgtcgaggaccacgacgtcgacccgctcgaggtcgccgcggccctg
gccgtgatctcgcagggcgaccagcccttcttcgcccaggagctgcccgagcccaagcgc
aaggagcgcgatcgcggcgagcgctcggagcgcgggggacgcaccccgcgctccgaggag
ggcaaggcgacgtactggatggccgtgggccacaagcaccgtgcgcttccgggctcgatc
gtcggcgccctgaccaacgagggcgggctcaagggctcggacatcggcgcgatcgagatc
aagccgtcgttcaccctgatcgggctgccggacgatctctcccgcggagacctggaccgc
ctgggcgccatcgagatcaacggccagcgcctggacatccgccaggaccgcggccccaag
tccagcggcgcgcgcagcgaccgcggcgatcgcggcggctaccgcggcgacgaccgccgc
ggaggccgctcggcccgtcccgagcacagcggcggccacaagaagttcacgggtggccgg
aagggctcgcagcgccacggatcgcgctga
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